| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5506 |
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| Symbol | |
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| ID | 8361683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 7023304 |
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| End bp | 7025487 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644967652 |
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| Product | lipolytic protein G-D-S-L family |
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| Protein accession | YP_003125136 |
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| Protein GI | 256424483 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00398864 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.00322716 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGTTGT ATCTATTGGC GCTGCTTTTT CCTTTGATCA GTTGGATACC GACAGACGAT
CCGCCGCGCG TGTTTATGAT CGGAGATTCC ACCATGGCCG ATAAACCCCT CGCTGACAAT
CCCGAAAGAG GATGGGGACA GTTGTTCCCC TTGTTCCTGC AGAAAGGCGT GACGGTAAAA
AACTATGCCG TGAATGGTCG CAGTACCAAA AGTTTCATCA ATGAGCATCG CTGGGATAGC
GTTTTAGTGC AATTAAAGGC CGGAGACTGG GTTATTATCC AATTCGGGCA TAATGACTCA
AAAAAGGATG ATTCGACCCG TTTTGCGGCT CCCAGGGGCG CTTATAAGGA TAACCTGATC
CGTTTTGTGA AAGAAGCCCG GGCCAAAGAA GCTAATCCTA TCCTGGTTAC GCCGGTAATG
CGCAGGAAGT TTGATGAAAA AGGCGCTTTT GTTGACCAGC ATGGCGAATA CCCCGGGGTA
GTACGCGAGA TTGCCGCCAG TCTGAAAGTA CCGCTGATCG ATCTGCATAA AAGCAGTGAA
GCCTTACTGG TACAGCAGGG CGTACAAGGT TCCGAAAAGC TGTTTAAAAC CACTCCCGCA
GGGCACTATA CAACCCTGCC TAATGGCGTA ACGGATAATA CCCATTTCAA TACTTATGGC
GCTACCCTGG TTGCCGGACT GGTAGCCAGA GAGATCAGGG ATAAACATAT CGGGCTGGAG
AAATATCTGC AGGAGACCGG ATTCGAAGGC AAATACCGTT TTGACCTGCC CGAAATCTAT
GAGCCGCATT TCAGAAGAGA TACACTCAGT ATCGTCGCAT TGGGGGCGAA AGCAGACGGT
GTGACGCTGA ACAGTAAAAT CATCAATGCT GCCATTACCA AAGCTAGTGA GAACGGCGGA
GGTGTGGTGA TGATACCGGC GGGATTGTGG CTGACCGGTC CTATCGTCAT GAAAAGTAAT
GTAAACCTGT ACCTCGCACC TAATGCCCTG TTACAGTTTA CAACTGATTT TGACCAGTAT
CCGCTTGTAG AGACGACATA TGAAGGGTTA AAAGCCATGC GCTGTCAGGC GCCGATATCT
GCTGTAAACG CAGAAAATAT CGCTATTACG GGTAAAGGGA TCATAGATGG TGGCGGCGAT
GCCTGGCGCA TTGTCAAGAA AGATAAACTG ACAGAATCGC AATGGAAGAA ATTGCTGGCT
TCGGGGGGGA TAGAAGGAGA AGACAAAAAG ACCTGGTACC CTTCGGCAAA GTCCCAGAAA
GGATCGCATA CCAAACTCGC CGGTGTGATT GAATCAGGTA AAACGGCTGC GGATTACAAC
GATATCAAGG ACTTTCTCCG TCCTAATATG CTCAGCATCA CATCCTGTAA ATATGTATTA
CTGGAAGGGG TGACTTTCCA GAATTCACCG GCCTGGTGTC TGCATCCGCT GCTGACCGAA
CATATTACTT TAAGAGACGT ATACGCTAAA AATCCTTGGT ATGCCCAGAA TGGCGATGGT
ATTGACCTGG AATCCTGTCG TTATGCACGT ATTGAAGGTT GCACCTTTGA TGTGGGTGAT
GATGGCATCT GTATCAAGTC CGGTCGTGAT GAACAGGGTC GTAAGCGTGG TGTAGCTACA
GAAGACGTGA TCGTCAATAA CTGTACGGTA TATCACGCAC ATGGCGGTTT CGTTGTGGGC
AGTGAAATGT CCGGCGGTGC GAGAAACCTG TTTGTTTCCA ATTGTTCTTT CCTCGGTACC
GATATCGGTC TGCGTTTTAA AACAACCCGT GGCCGTGGTG GTATAGTAGA AAAGATCTAC
GTCAATAACA TCAACATGAA GGATATACCG GCGGAAGCGA TCCTCCTTGA CATGTATTAC
ATGGCGAAAG ATCCTGTGCC ATTATCCGGA GAGAAACGCG AAGCGGTAAA AGTTGAACTC
TTTCCTGTAA CAGATGCTAC TCCACAGTTC AAAGACTTCC ATATCAGCAA TGTGGTATGT
CACGGTGCGG AGAAAGCCAT TTTTATACGC GGATTACCGG AGATGCCAAT CAGCGATATC
CATCTGAAAG ATATCACCAT CAAGGCAAAG AAAGCGGGTG ACTGTATCGT TGGCAGCAAT
ATCAGTATGA GTAATGTGAC ACTGATCACG GAAGACAATG GCAAACTTAA TGTACAGGAT
AGTAAACAGG TTAGTATGAA ATGA
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| Protein sequence | MKLYLLALLF PLISWIPTDD PPRVFMIGDS TMADKPLADN PERGWGQLFP LFLQKGVTVK
NYAVNGRSTK SFINEHRWDS VLVQLKAGDW VIIQFGHNDS KKDDSTRFAA PRGAYKDNLI
RFVKEARAKE ANPILVTPVM RRKFDEKGAF VDQHGEYPGV VREIAASLKV PLIDLHKSSE
ALLVQQGVQG SEKLFKTTPA GHYTTLPNGV TDNTHFNTYG ATLVAGLVAR EIRDKHIGLE
KYLQETGFEG KYRFDLPEIY EPHFRRDTLS IVALGAKADG VTLNSKIINA AITKASENGG
GVVMIPAGLW LTGPIVMKSN VNLYLAPNAL LQFTTDFDQY PLVETTYEGL KAMRCQAPIS
AVNAENIAIT GKGIIDGGGD AWRIVKKDKL TESQWKKLLA SGGIEGEDKK TWYPSAKSQK
GSHTKLAGVI ESGKTAADYN DIKDFLRPNM LSITSCKYVL LEGVTFQNSP AWCLHPLLTE
HITLRDVYAK NPWYAQNGDG IDLESCRYAR IEGCTFDVGD DGICIKSGRD EQGRKRGVAT
EDVIVNNCTV YHAHGGFVVG SEMSGGARNL FVSNCSFLGT DIGLRFKTTR GRGGIVEKIY
VNNINMKDIP AEAILLDMYY MAKDPVPLSG EKREAVKVEL FPVTDATPQF KDFHISNVVC
HGAEKAIFIR GLPEMPISDI HLKDITIKAK KAGDCIVGSN ISMSNVTLIT EDNGKLNVQD
SKQVSMK
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