| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5505 |
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| Symbol | |
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| ID | 8361682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 7021255 |
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| End bp | 7023144 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644967651 |
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| Product | glycosyl hydrolase family 88 |
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| Protein accession | YP_003125135 |
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| Protein GI | 256424482 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0777464 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00601524 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAC TACTGGCTTT TCTCCTCCTC CTCCCTTCTG CCGCTTTTGC GCAATCGGCA
AAGATGGCGG AAACCATGAT ACGCATATGG GGAGATTCTT TACAACTGGC AGGAAGAAAT
GCACACTGGA CATATGATCA GGGTGTAGTA CTCGAAGGTT TTACCGGATT GTGGAAGAAC
ACCGGCGACG GCAGGTATTT TAAATTCATA CAGACAGGTC TTGATCATTA CATTGAGAAA
GACGGTACGA TCCGGACTTA TAAGGCGGAG GATTACAACA TAGACAATAT CAAAAATGGG
CGCTCATTAC TCTTGCTATA CAAAGTGACA AACGAAGAGA AGTATAAACT GGCGGCCGAC
AAACTAAAAG CACAGCTGGA TAAAATGCCG CGTACGAAAG AAGGCGGCTT CTGGCATAAG
AAACGCTATC CCTTCCAGAT GTGGCTGGAC GGCTTGTACA TGGCAGAACC TTTCTATGCG
GAATATGCTG CGATGTATCA TGACGAAACA GCCTTCAAAG ACATCACCCG TCAGTTTGTA
CTGATGGAAG AACACTCCCG TGATAATAAA ACAGGGTTGC TGTATCATGG TTATGATGAA
TCCCGTGAGC AACGCTGGGC GGATAAAACC ACCGGTCGTT CTCCTAATTT CTGGGGACGT
GCAATGGGCT GGTACGGGAT GGCGCTGGTA GATGCACTGG AATATTATCC TGCCGGACAT
CCGGGAAGGG ATAGTCTGCT GAAGATCCTG AACAGGATGG CAGTAGCCGT TAAGAAATAC
CAGGATCCTG CCAGTGGTTG CTGGTATCAG GTGCTGGACA AAGCAGGGTC TAAAGGTAAC
TACCTGGAGG CTTCGGGTTC CTGCATGTTT GTGTATGCAC TGGCCAAAGG TATAAGACTG
GGTTATTTGC CTGCAAGCTA CCGGACGGTA GCTGAGAAAG GCTATAAAGG GATTACTAAA
CAATTTGTAC GCACTGCGCC GGAGGGAGGC GTTAACCTGG AGGGTACCGT AAGTGTAGCT
GGTCTGGGGG GAGATCCTTA CAGGGATGGC AGCTATGCTT ACTACCTGAG TGAGAAAGTA
GTGACCAATG ATCCTAAGGG TGTCGGCGCT TATATGCTGG CTTCAAATGA GATGGAGCAG
GCGGCTATTC CGCAGACAGG TAAAGGACTG ACAGTAACTA TCGATAACTT TTTTAATAAC
GAATTCAGGA AAGGGATTAC GGGGCAACCC GAATCATGGC ATTACCTCTG GAATGAGATG
GATAATGGCG GCTTTTCGCT CTGGGGACAT ATTTTCCATA ACAGAGGCGC AAAGACCAAC
ATACTATCAG CAGCACCCAC CGCGGCCAAT CTGGCCAAAT CCGATATCCT GATCATCGTA
GATCCTGATA CAGAGAAGGA AACGGCAAAG CCTAATTACA TGACAGAGGC TCATGCTACG
CAATTGGAAA ACTGGGTGAA GCAGGGTGGC GTATTGGTGA TACTACAGAA TGACGCCGGC
AATGCAGAGA TCAAAACTTT CAATACACTG ACAGATAAAT TCGGTATTCA TTTCAAGGAA
GACAGCCGTA ATCATGTGGA AGGAAAACAA TTTGAACAAG GTGCACTGTT CCTGCCGGCA
GAGAATAGTG TATTCTCACA TACAAAGAAG ATCTACATCA AAGAGATCTC TACACTTGAA
TTAAAACAAC CAGCCAAAGC AGTCTATACC GATAAGGGAG ATGTAATCAT GGCGACCGCC
AAAGTGGGCA AGGGAGCCGT ATTCGCCGTA GGTGATCCCT GGTTTTATAA TGAATACCTG
GATGGACGCC GTTTACCGGC TTCCTTTGAA AATTACCAGG CAGCGATTGA TCTGACAGCA
TGGTTATTCA GACAGGCGTC GCATAAATAA
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| Protein sequence | MKKLLAFLLL LPSAAFAQSA KMAETMIRIW GDSLQLAGRN AHWTYDQGVV LEGFTGLWKN
TGDGRYFKFI QTGLDHYIEK DGTIRTYKAE DYNIDNIKNG RSLLLLYKVT NEEKYKLAAD
KLKAQLDKMP RTKEGGFWHK KRYPFQMWLD GLYMAEPFYA EYAAMYHDET AFKDITRQFV
LMEEHSRDNK TGLLYHGYDE SREQRWADKT TGRSPNFWGR AMGWYGMALV DALEYYPAGH
PGRDSLLKIL NRMAVAVKKY QDPASGCWYQ VLDKAGSKGN YLEASGSCMF VYALAKGIRL
GYLPASYRTV AEKGYKGITK QFVRTAPEGG VNLEGTVSVA GLGGDPYRDG SYAYYLSEKV
VTNDPKGVGA YMLASNEMEQ AAIPQTGKGL TVTIDNFFNN EFRKGITGQP ESWHYLWNEM
DNGGFSLWGH IFHNRGAKTN ILSAAPTAAN LAKSDILIIV DPDTEKETAK PNYMTEAHAT
QLENWVKQGG VLVILQNDAG NAEIKTFNTL TDKFGIHFKE DSRNHVEGKQ FEQGALFLPA
ENSVFSHTKK IYIKEISTLE LKQPAKAVYT DKGDVIMATA KVGKGAVFAV GDPWFYNEYL
DGRRLPASFE NYQAAIDLTA WLFRQASHK
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