Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5504 |
Symbol | |
ID | 8361681 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7019758 |
End bp | 7021203 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644967650 |
Product | altronate oxidoreductase |
Protein accession | YP_003125134 |
Protein GI | 256424481 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0246] Mannitol-1-phosphate/altronate dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.578611 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.00540225 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAATTGA ACAAACAGTT TTTGACAGGC AAAGCGCGTG CTGTATTGCC CGAAAAAGTA CTGCAATTCG GTACCGGTGT GTTACTGCGT GGTCTGCCTG ATTATTTCAT TGATAAGGCC AATAAGGCCG GTATTTTCAA TGGGCGTATC GTCGTGGTGA AATCCACTGA TAAAGGCAAT ACCGATGCTT ACAGTGAACA GGATTACCTG TATACGCATT GTATCCAGGG GATCATGCAG GGAAGAAGAG TAGAAGAGTA TGTTGTCAAT GATGCGATCA GCAGGGTATT GTCTGCTACC GGTGAATGGG AACAAATCCT GGAATGCGCG GCTGATCCGG AGATGGAGAT CATTATTTCC AACACGACAG AGGTGGGTAT TACACTGACG GCGGATAACA TAGATGCTGC TCCGCCGGCT TCTTTCCCGG GTAAACTACT GGCATTTCTT TTACGTCGTT ATCGGCATTT CAAAGGAGAT ATCAATAAGG GAATGGTTAT CATTCCTACA GAACTGATCC CTGATAACGG GACTAAATTG CAGCACATCC TTTTAGAGCT GGCGCAACAG CATCAGCTGG AAGCTGCTTT TATCAACTGG TTATCTGCTG CGAATCATAT CTGTAATTCA CTGGTGGACC GTATCGTTCC GGGCGCTCTT CCGGCAGCTG CACAGGCTGC GGTGGAAGCG CAACTGAGGT ATTCAGATCA ACTGATGATC ATGTCAGAAC CTTATGCTTT ATGGGCGATA GAGACCTCCA GTGAGCGGGT CAGGAAGGTG TTGTCATTTG CACCTGCGGA TAGCGGGGTC GTGCTGGCGC CGGATATTAA TATCTTCCGC GAACTGAAAC TACGGTTGCT GAATGGTACG CATACGCTTA GCTGCGGACT GGCCGTATTG GCAGGATTTA ATACAGTAAA AGAGGCAATG GAAGACACCG CCATGGAAAG CTGTATCTCT GCGCTTGCGC AACATGAAAT AGTACCTGCT ATTACGGATG TAACGATCCG GGAAGATGCG GCTTTACGTT TTGCCGGCAG TGTGCTGGAT CGTTTCAGGA ACCCCTTTAT CGAACATCGC TGGCAGAGTA TCACCATGCA GTATACCTCC AAAATGAAGA TGAGGGTGAT ACCTGTGATC GTACGACATT ATCAGCGCCT GGATGAAGTT CCTGCACTGA TGGCCTTAGG CTTTGCAGCT TACCTGTTGT TCATGCGCGA TGGAGAGGTG ACGGATGACT ATGCAGCCTA TTTTAAAGAA AAATGGCAAA AACTGGAACC AGCTGTACTT GTACAGACCG TGTTGAAAGA TACCGCCCTT TGGGGAGTAG ATCTTACGCA GTTACCGGGT TTTTCACATG CCGTTACTAT CATGATGGGC GCTTTGCTCA CAGAAGGAGC ACCGTCACTA ATCAGACGGG TATCAGAAGA AACAACGATC GCTTAA
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Protein sequence | MQLNKQFLTG KARAVLPEKV LQFGTGVLLR GLPDYFIDKA NKAGIFNGRI VVVKSTDKGN TDAYSEQDYL YTHCIQGIMQ GRRVEEYVVN DAISRVLSAT GEWEQILECA ADPEMEIIIS NTTEVGITLT ADNIDAAPPA SFPGKLLAFL LRRYRHFKGD INKGMVIIPT ELIPDNGTKL QHILLELAQQ HQLEAAFINW LSAANHICNS LVDRIVPGAL PAAAQAAVEA QLRYSDQLMI MSEPYALWAI ETSSERVRKV LSFAPADSGV VLAPDINIFR ELKLRLLNGT HTLSCGLAVL AGFNTVKEAM EDTAMESCIS ALAQHEIVPA ITDVTIREDA ALRFAGSVLD RFRNPFIEHR WQSITMQYTS KMKMRVIPVI VRHYQRLDEV PALMALGFAA YLLFMRDGEV TDDYAAYFKE KWQKLEPAVL VQTVLKDTAL WGVDLTQLPG FSHAVTIMMG ALLTEGAPSL IRRVSEETTI A
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