| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5484 |
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| Symbol | |
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| ID | 8361661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6993345 |
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| End bp | 6993887 |
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| Gene Length | 543 bp |
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| Protein Length | 180 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644967630 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003125114 |
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| Protein GI | 256424461 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.233066 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0394769 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCCGC TCAACAATAC AGATATAGTT AATGGGGTCC GGAACAGGGA TAAACAGGTT
TTTGAAGTCA TATTCAATCA GTTTTCACCC TCCATGTATA GTATCGCCCT GCGATACCTG
CGTGACCAGG ACGAAGCACA GGATGTTGTG CAGGATGTGT TCCTGAATCT ATGGCGCACA
GCTGACAACC TGGATGAACG CGCCCCCGTG CAACATTATC TGGCCAGGGC CACAGTCAAT
ACCTGCCTTA ACCGGATTAA AAAGGCGCAA AGACAGCAAC AGTATGCGAA AGAGCAGCAA
TTCACTTCCA CGGAATCTAC AGTCGAACAC TTGCTGCTGG AGCATAAGGA ATTGGAAGCC
CAATATTTAT CTATCCTTGA GAAATTACCA GATCAATGCC GCCGGGTATT TGAAATGAGC
CGGTTCAAGG GTTTGTCTCC TACCGAAATT TCCCAGCAAC TGAATATTTC CATCAACACG
GTCTATACAC ACCTGACCAC CGCGCTGAAA AAAATCAGAC TCGGTTTGTT AAACCAGCAG
TAA
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| Protein sequence | MLPLNNTDIV NGVRNRDKQV FEVIFNQFSP SMYSIALRYL RDQDEAQDVV QDVFLNLWRT
ADNLDERAPV QHYLARATVN TCLNRIKKAQ RQQQYAKEQQ FTSTESTVEH LLLEHKELEA
QYLSILEKLP DQCRRVFEMS RFKGLSPTEI SQQLNISINT VYTHLTTALK KIRLGLLNQQ
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