Gene Cpin_5433 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5433 
Symbol 
ID8361610 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand+ 
Start bp6944649 
End bp6945308 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content47% 
IMG OID644967579 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_003125063 
Protein GI256424410 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.591445 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.901905 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAAAACA GAAACACATT TATCGCACCG TCTCTCCTGG CGTCCAATTT CCTGGAGCTG 
GGTAAAGAAG TTGAGATGTT GAATCGCAGT GAGGCGGATT GGTTGCACCT GGACGTAATG 
GATGGCAGAT TCGTACCGAA TATCAGTTTT GGCTTGCCGG TGATCTCACA GCTCAGAAAG 
GCGACCACAA AGACCTTTGA TGTACATCTG ATGATTGAAG AGCCGGAGAA ATATGCAGAG 
GATTTTAAGA AAGCGGGCGC TGACCTGCTG ACGGTGCACT ATGAAGCCTG CACACACTTA 
CACAGGAATA TACAACAGAT CAAAAGTCTG GGCATGAAAG CAGGTGTGGC ATTGAATCCG 
CATACACCGG TGCATCTGCT GGAGAATATT ATCAATGATA TCGATCTTGT ACTGATCATG 
AGTGTGAATC CTGGTTTCGG CGGACAACAC TTCATTCAGA GAAGCCTGGA TAAGATACGC 
CAGACACGTG AGATGATCAA TCACTACAAG GCACATGCGC TGATTGAAGT GGATGGCGGT 
ATTACATTAG ATAATGCGGC GAGTATACTG GATGCAGGTG CTAATGTGCT GGTAGCGGGT 
AGTTCGGTGT TTGCGTCCAA AGATCCGGAA GCAACGATCA GTGCGTTGAG AAAAGCATAA
 
Protein sequence
MENRNTFIAP SLLASNFLEL GKEVEMLNRS EADWLHLDVM DGRFVPNISF GLPVISQLRK 
ATTKTFDVHL MIEEPEKYAE DFKKAGADLL TVHYEACTHL HRNIQQIKSL GMKAGVALNP 
HTPVHLLENI INDIDLVLIM SVNPGFGGQH FIQRSLDKIR QTREMINHYK AHALIEVDGG 
ITLDNAASIL DAGANVLVAG SSVFASKDPE ATISALRKA