| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5415 |
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| Symbol | |
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| ID | 8361592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6924237 |
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| End bp | 6925934 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644967561 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_003125045 |
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| Protein GI | 256424392 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.188636 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATCTCA ACATTAGAGC GGAGAAAGAA AACACCTATG ACGCCATTGT AGTTGGTTCG
GGCATCAGTG GTGGTTGGGC GGCCAAAGAG TTATGCGAAA AAGGGCTGAA AACCCTGGTA
TTAGAGCGTG GTCGTAACGT AGAACATATC AAGGACTATA CGACGGCGAT GAAAGCGCCG
TGGGAGTTTC CTCACCGTTT ATCAGGCACA CTTGAACAAA AGGAAAATTA TCCGATACAG
AGTCAGTGTT ATGCCTTTGA TGAATCTTCC CAGCAATACT GGGTAAATGA CAAAGAAAAT
CCATACAATC AGGTAAAGCC ATTCAACTGG CTGCGCGGAT ATCACGTAGG TGGGCGTTCC
CTGATGTGGG GCCGTCAGGT GTACCGTTGG AGCGACATAG ACTTCGGAGC CAATGCAAAA
GATGGTTTCG GGGTTGACTG GCCTATCCGT TATAAAGATA TTGAGTCCTG GTATGATTAC
GTGGAAACGT ATATCGGCAT CAGTGGTCAG GCAGAAGGAT TGCCGCAATT GCCCGATGGT
AAATTCATGA AGGCGATGGA AATGAACTGT CTGGAGAAAC ATGTGGCTGC AAGGATTAAA
GAACGTTATG ATGATCGTAT CATGACGATC GGCCGTGTGG CACACGTAAC AGAGAAACAC
AACGACAGGG GCCCTTGTCA GTACCGTAAT CTTTGTCACC GTGGATGTCC TTTTACCGGA
TATTTCAGCA GTAACGGCGT TACCTTGCCG GCTGCAGCTA AAACAGGTAA TATGACCCTA
CGTCCTGACT CCATTGTGCT GGAGGTGATC TATGATGATC AGAAGGGCAA GGCGACCGGT
GTAAAGATCC TGGATGCACA CACGATGCAG ACAGTGGAAT ACTATGCAGA TATTATCTTC
CTGAATGCGT CTACTTTGGG TACAGCTTCC ATTCTCCTGA ACTCTGTTTC TAACCGTTTC
CCGAATGGTT TTGGTAATGA CAGCGAACAG GTAGGACACA ACCTGATGGA CCACCACTAT
GGCGTTGGCG CCGGTGGAGA GTTTGAGGGT TTCCAGGATC AGTACTACAG CAGCGGACGC
AGACCTAACG GTATTTACAT TCCGCGTTTC CGTAATATCA GTACGGCAAC GACACAAAAA
GACTATGTAC GTGGTTTTGG CTATCAGGGC GGTGGAGAAC GTGGTCGTGG GGTGTCATTT
GACGGCGTAG GCGCATCGCT GAAAGAATCT TTGTCTGAAC CAGGGAACTG GAGTTTTGGC
ATCGGTTCAT GGGGCGAGCA TTTACCTTAT TATGAGAATA AAGTAACCCT GAATAAGGAT
AAGAAAGATA AGTACGGTCT GCCGACATTG GATATCGACT GCGAATTTAA AGAGAATGAG
CTGGCGATGC GTAAGGATAT GGCGGCAAGT GCGAAGGAAA TGCTGGAAGC GGCCGGTCTG
AAAAATGTTG GTACGTATGA CAGTATGCCG CCTCCGGGAC ATTGTATTCA TGAAATGGGG
ACGGCCCGTA TGGGACGGGA TCCGAAGACT TCCGTACTGA ATGGCTGGAA CCAGGTACAC
GCCGCTAAGA ACGTATTTAT TACGGATGGT GCGTGTATGA CTTCTTCCGC CTGTCAGAAT
CCTTCTATAA CCTACATGGC GCTGACGGCA AGAGCCTGCG ACTATGCGGT GAAGGAACTG
AAGAAAGGCA ATCTGTAG
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| Protein sequence | MHLNIRAEKE NTYDAIVVGS GISGGWAAKE LCEKGLKTLV LERGRNVEHI KDYTTAMKAP
WEFPHRLSGT LEQKENYPIQ SQCYAFDESS QQYWVNDKEN PYNQVKPFNW LRGYHVGGRS
LMWGRQVYRW SDIDFGANAK DGFGVDWPIR YKDIESWYDY VETYIGISGQ AEGLPQLPDG
KFMKAMEMNC LEKHVAARIK ERYDDRIMTI GRVAHVTEKH NDRGPCQYRN LCHRGCPFTG
YFSSNGVTLP AAAKTGNMTL RPDSIVLEVI YDDQKGKATG VKILDAHTMQ TVEYYADIIF
LNASTLGTAS ILLNSVSNRF PNGFGNDSEQ VGHNLMDHHY GVGAGGEFEG FQDQYYSSGR
RPNGIYIPRF RNISTATTQK DYVRGFGYQG GGERGRGVSF DGVGASLKES LSEPGNWSFG
IGSWGEHLPY YENKVTLNKD KKDKYGLPTL DIDCEFKENE LAMRKDMAAS AKEMLEAAGL
KNVGTYDSMP PPGHCIHEMG TARMGRDPKT SVLNGWNQVH AAKNVFITDG ACMTSSACQN
PSITYMALTA RACDYAVKEL KKGNL
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