| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5409 |
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| Symbol | |
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| ID | 8361586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6914874 |
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| End bp | 6916004 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644967555 |
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| Product | glycosyl hydrolase family 88 |
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| Protein accession | YP_003125039 |
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| Protein GI | 256424386 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000034973 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.118478 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAAAT TGAGAATACA CCTGGCAATC GTCGCTCTAG CGGGCCTACT GACCCCGTTC
AGTAGTGTAT TTGCTCAGAA GATCTTTAAA GACTGGCCAA TGGGTACAGA ACCGGCCGCT
ATCGGTCTTT TTGTGGCCAA CCACTATGTA AGTGGCCCTT TTTACAATTT TGGCAACCCT
GGTCAACCAC AATCTATTAC CTATCCGGAG GTTTGCACCT GGTATGGCGC ACTCCAGTTT
GCGGAAGCAA GCGGCAATAA AGAACTGGCC CAAAAGCTGG CCCTGCGTTA TGAGCCTTTA
CTGGCACAAT CCCAGAGCCT TGTTCCCAAA GCTGACCACG TTGATCATAG TGTCTTTGGT
GCGGTTCCCC TGGAATTATA CCTCCAGACC AATCAATCCA AGTACCTGGA GGCAGGAAAA
GCATTTGCTG ATCAGCAATG GCAACTACCG GACAATCCGC AGGCAAATCA GCAGGAATAC
CAGTCCAAAG GACTTTCCTG GCAGACCCGT ATGTGGATCG ATGACATGTA CATGATCACT
TTGTTGCAGG TAGAAGCATT CCGCGCTACC GGCAATAAGG AGTACCTGGA CCGTGCCGCC
CGTGAGATGG TGGTATACCT GGACGGGATG CAACAACCAG ACGGACTCTT TTTCCATGCA
CCTGACGCTA AGTTTCTCTG GGGTCGTGGT AATGGCTGGG TAGCTGCCGG TATGACCGAG
TTACTGAGCG TACTGCCTTC CGGCCATGCG GACCGTGCAA AGATCCTGGA TAGCTATAAA
AAGATGATGG CTGGTCTGAA GAAACTGCAG GACAAGAACT ACATGTGGCA TCAGCTGCTG
GACGATCCGA CTTCTTTCGC AGAAACATCC TGCACCGGCA TGTTTACTTA CGCGATTATT
GTAGGGGTTA AAAAGGGCTG GCTGGACGAG AAAGAATACG GTCTCATAGC TAAGAACGCC
TGGACGACCC TGGTAAAATA TATCAATGAA ACAGGTGATG TGAAAGATGT ATGTGAGGGT
ACCAATAAAA AGAACGATCA GCAGTACTAT CTGAACCGTA ACCGGGTTAC CGGCGATCTG
CATGGTCAGG CGCCTGTATT ATGGGCGGCA GCGGCCTTAT TAGCCAACTG A
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| Protein sequence | MRKLRIHLAI VALAGLLTPF SSVFAQKIFK DWPMGTEPAA IGLFVANHYV SGPFYNFGNP
GQPQSITYPE VCTWYGALQF AEASGNKELA QKLALRYEPL LAQSQSLVPK ADHVDHSVFG
AVPLELYLQT NQSKYLEAGK AFADQQWQLP DNPQANQQEY QSKGLSWQTR MWIDDMYMIT
LLQVEAFRAT GNKEYLDRAA REMVVYLDGM QQPDGLFFHA PDAKFLWGRG NGWVAAGMTE
LLSVLPSGHA DRAKILDSYK KMMAGLKKLQ DKNYMWHQLL DDPTSFAETS CTGMFTYAII
VGVKKGWLDE KEYGLIAKNA WTTLVKYINE TGDVKDVCEG TNKKNDQQYY LNRNRVTGDL
HGQAPVLWAA AALLAN
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