Gene Cpin_5409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5409 
Symbol 
ID8361586 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6914874 
End bp6916004 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content50% 
IMG OID644967555 
Productglycosyl hydrolase family 88 
Protein accessionYP_003125039 
Protein GI256424386 
COG category[R] General function prediction only 
COG ID[COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000034973 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.118478 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAAAT TGAGAATACA CCTGGCAATC GTCGCTCTAG CGGGCCTACT GACCCCGTTC 
AGTAGTGTAT TTGCTCAGAA GATCTTTAAA GACTGGCCAA TGGGTACAGA ACCGGCCGCT
ATCGGTCTTT TTGTGGCCAA CCACTATGTA AGTGGCCCTT TTTACAATTT TGGCAACCCT
GGTCAACCAC AATCTATTAC CTATCCGGAG GTTTGCACCT GGTATGGCGC ACTCCAGTTT
GCGGAAGCAA GCGGCAATAA AGAACTGGCC CAAAAGCTGG CCCTGCGTTA TGAGCCTTTA
CTGGCACAAT CCCAGAGCCT TGTTCCCAAA GCTGACCACG TTGATCATAG TGTCTTTGGT
GCGGTTCCCC TGGAATTATA CCTCCAGACC AATCAATCCA AGTACCTGGA GGCAGGAAAA
GCATTTGCTG ATCAGCAATG GCAACTACCG GACAATCCGC AGGCAAATCA GCAGGAATAC
CAGTCCAAAG GACTTTCCTG GCAGACCCGT ATGTGGATCG ATGACATGTA CATGATCACT
TTGTTGCAGG TAGAAGCATT CCGCGCTACC GGCAATAAGG AGTACCTGGA CCGTGCCGCC
CGTGAGATGG TGGTATACCT GGACGGGATG CAACAACCAG ACGGACTCTT TTTCCATGCA
CCTGACGCTA AGTTTCTCTG GGGTCGTGGT AATGGCTGGG TAGCTGCCGG TATGACCGAG
TTACTGAGCG TACTGCCTTC CGGCCATGCG GACCGTGCAA AGATCCTGGA TAGCTATAAA
AAGATGATGG CTGGTCTGAA GAAACTGCAG GACAAGAACT ACATGTGGCA TCAGCTGCTG
GACGATCCGA CTTCTTTCGC AGAAACATCC TGCACCGGCA TGTTTACTTA CGCGATTATT
GTAGGGGTTA AAAAGGGCTG GCTGGACGAG AAAGAATACG GTCTCATAGC TAAGAACGCC
TGGACGACCC TGGTAAAATA TATCAATGAA ACAGGTGATG TGAAAGATGT ATGTGAGGGT
ACCAATAAAA AGAACGATCA GCAGTACTAT CTGAACCGTA ACCGGGTTAC CGGCGATCTG
CATGGTCAGG CGCCTGTATT ATGGGCGGCA GCGGCCTTAT TAGCCAACTG A
 
Protein sequence
MRKLRIHLAI VALAGLLTPF SSVFAQKIFK DWPMGTEPAA IGLFVANHYV SGPFYNFGNP 
GQPQSITYPE VCTWYGALQF AEASGNKELA QKLALRYEPL LAQSQSLVPK ADHVDHSVFG
AVPLELYLQT NQSKYLEAGK AFADQQWQLP DNPQANQQEY QSKGLSWQTR MWIDDMYMIT
LLQVEAFRAT GNKEYLDRAA REMVVYLDGM QQPDGLFFHA PDAKFLWGRG NGWVAAGMTE
LLSVLPSGHA DRAKILDSYK KMMAGLKKLQ DKNYMWHQLL DDPTSFAETS CTGMFTYAII
VGVKKGWLDE KEYGLIAKNA WTTLVKYINE TGDVKDVCEG TNKKNDQQYY LNRNRVTGDL
HGQAPVLWAA AALLAN