Gene Cpin_5395 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5395 
Symbol 
ID8361572 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6898906 
End bp6900426 
Gene Length1521 bp 
Protein Length506 aa 
Translation table11 
GC content48% 
IMG OID644967542 
ProductRagB/SusD domain protein 
Protein accessionYP_003125026 
Protein GI256424373 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0481462 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.244827 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAT TCGCTTACAG ATATATACTC CCCGCCATGT TGGGCGTTTC CACGCTGGTG 
GGCTGTTCTA AATTGGATGA GCAACCCTAT GGGATGATCA ATTCACAGAC CTACTATAAA
ACTGCCGACG ACGCACGGGC AGCCATTATA TATGCCTATT CCATCCTGCC GGAGGTAGGT
TATTACTCAA GAGGTTATTA TATCATCACA GAATTACCGA CAGAGAATCT GACGCAGAAA
GGCGATGCGG GCGTAGGCAA CTTCGAACTG GATGAATTGC GTACCACATC CACCAACCCC
GATCTCGACA ATATCTGGAC CTATATGTAC AGAGGTATTG CCAGGGCGAA TGCGGTGATT
GCCAATGTGC CGAAGATCCC TGGTATGACG GATGCAGAAC GTAACCAGAT CACAGGGGAA
GGTTATTTCC TGCGGGCCTT ACACTTCTTT AACCTGGTAA GGATGTTTGG AGAAGTGCCT
TTACGCACAA CGACTATTGA TGATGCTTCG CAGATACCTA TTGCGAAATC CCCTATCAAA
GACGTCTATA CACAGATCGT CAGTGATCTG CAGGCGGCAG ATTCATTGAT TACCCAATCG
CGTATCAGTG AAGGTCGTGC CAATCAACCT GCGGCAGAAG GATTACTCGC GAAGGTGTAT
CTGCATCTGG CATCTTCCAA AGCATCCGGT TCTCCGGGAT ATGATTTTGT GACTAATCCG
GACGAGTTAT ATGCACAGGC AAAATTATAT GCAGAGAAGG TAGTTGCCGG CCAGTCGGCA
TTTGCATTAA CACCTGCATT GCCAGATATC TTTAACATTG ATATCTACAA GAAGGCGGCC
GTAACAGAAC ACATTTTTGA TGCTGCTGTG GACAGAAGCG GTGACCGGGA AGGTAGTTTT
TCAAAACTGC CCAACATGTT CCTGCCTGCC GACCGTCCCA TGACGATTGC CTATAACCAG
TTAAAGCCGG ATAGCGTGAA GATTGATATA GGACAGGGCT GGGGACACTT CCGGACAGAA
TCAGGTGTTT ATTTCAGTTA TGCGGATAAC GACCGTCGGA AAACACAGTT GATCGTGTCA
TCTTATACCA ACAACGGACA AACCTACCAG CTGGATATCA GCAGCAGTTC CCGTCCTTTC
ACCCGTAAGT TCATTGATCC GGCACGTATA GGAGATGCCA CCAGTGCCAA TTCTCCTATC
ATCCGGTATA GTGATATCCT GCTCACCTAT GCGGAGGCCT GCGGACCTAC GGCAGATGGA
TATGCTGCTG TTAATAAAAT ACGCGCCCGT GCAGGTATTG GCGATTTACA GCCCGGACTG
AGTGCTGCTA CTTTCCGTAA TGCAGTCGTA CAGGAACGTG CCTGGGAACT GGCTTTTGAA
GGCAGCCGTT TGTTTGATCT GCGCAGAACG AATACCATGG AAAAAGTACT GGTACAGCAA
TATGGTAAAG TCATCACCAG CGGCGCTTAC TTCTTCCCGA TTCCGCAAAG GGAACTGGAT
ACAAATCCTT TAATGAAATA A
 
Protein sequence
MKKFAYRYIL PAMLGVSTLV GCSKLDEQPY GMINSQTYYK TADDARAAII YAYSILPEVG 
YYSRGYYIIT ELPTENLTQK GDAGVGNFEL DELRTTSTNP DLDNIWTYMY RGIARANAVI
ANVPKIPGMT DAERNQITGE GYFLRALHFF NLVRMFGEVP LRTTTIDDAS QIPIAKSPIK
DVYTQIVSDL QAADSLITQS RISEGRANQP AAEGLLAKVY LHLASSKASG SPGYDFVTNP
DELYAQAKLY AEKVVAGQSA FALTPALPDI FNIDIYKKAA VTEHIFDAAV DRSGDREGSF
SKLPNMFLPA DRPMTIAYNQ LKPDSVKIDI GQGWGHFRTE SGVYFSYADN DRRKTQLIVS
SYTNNGQTYQ LDISSSSRPF TRKFIDPARI GDATSANSPI IRYSDILLTY AEACGPTADG
YAAVNKIRAR AGIGDLQPGL SAATFRNAVV QERAWELAFE GSRLFDLRRT NTMEKVLVQQ
YGKVITSGAY FFPIPQRELD TNPLMK