| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5389 |
|---|
| Symbol | |
|---|
| ID | 8361566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 6889251 |
|---|
| End bp | 6893495 |
|---|
| Gene Length | 4245 bp |
|---|
| Protein Length | 1414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644967536 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_003125020 |
|---|
| Protein GI | 256424367 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.157534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATAA GTGAGTGTAA GCCGGCTTTT TTGCGGATCA GCATCCTGAT ACTACTGATA
ATGACCGGAA CGTCTATAGA CGCCTCCGGA CAATCAGCCA ACTATAATAT CTACAGCATC
TCCACTGACA ACGGACTGCC TACCAACGAC TACCAGAAAA TCTATTATGA TACTAAAGGA
TTTGTCTGGC TGGCTTCTTT TGATGGACTG TTCCGTTGGG ACGGATATTC CATTACCAAA
TATCTGCACA GAGAAAACGA CTCTCTCAGT CTGAATAATA ATATTGTCTA TGCCATCTTT
GAAGATAGTC AGCATCGCTT ATGGGTTGGT ACCATCGATG GATTGAATTG TTACGATCCT
GCCCGGAACG TCTTCCGCCG CATACCCCTG AACGAAACGC ATGACAAGAT TCCGGTCAAT
GCCATACTGG AAGATGATGA TCACCATCTC TGGCTGGGTA CCTCCAATGG CCTCTGCCGC
CTGGACCCGG AACAACAAAA AGCCGAATGG TACCTGGGAC ATGGTGACGA AAACATCCTT
TTCTGCCTGG CACAGGGTCC CGGTCACACC TTATGGGCCG GTACCTTTAA TAAGGGGATC
GTCCGCTTTA ATACCCGCAC CCACCTGTTC AACTACCTCC GCAACAGTGC CGGTAATACG
GACATATTAC CCAGCAACAA AATCCAGTCG CTCCTGATAG ACAAACAGCA AAGAGTATGG
GTAGGAACGG AAGACAGAGG CGTTGCCGTA TTAGATATCG AGGGTAAGCG AAAAGCTGGC
TTCAACCCTA TAAGCGGTCA TACACTCTCT TCCCATAGCA ATATCCGCTG CCTCTATGAA
GACAAAGCAG GCACCGTCTG GATAGGTATT GGCCGTGAAC CGCTTTGTTT TGTCCGGAAA
AACGAGCTGA CACCTGCCAC TATCAACAAC CACTCCCAGA ATGGCAATCT ACCCTTAACC
TCCATTACCT CTATTACAGA AGACGATTTC GGTAATACCT GGTTTGCCTC TGCGGGGAAT
GGCATCTTCA CGACGAATAA AAACAAGAAC CACTTTACGA ACCTGCTGGG AAGTACCAAT
GCGCTCCCAG GACTTATCAC TACAGTCATC AGCGCAGTAC ATGAAAGCAG GAACGGAAAC
ATCTGGATAG GCACCGCCGG CAATGGTCTG ATACGTTACG GACAGGAGAA CGGAGGTAAC
TTACAAAAGA CACCTCTTTC CGGGGAACTG GCCATCAATG ATATACAGGA AGACAAACAG
GGCGATCTGT GGATGGCTAC CTGGGCCGAC GGACTTATCC GCTATACACC TGGTAATGGA
CGTATACAGC GCTTTACGCA TAATCCTGCC GACTCTAATT CCCTGGTCAA CAATGACGTA
AAAGCTTTAC TGGCAGATGA TTCTTTGCTT TGGATAGGTA CCCATGGCGA AGGATTGGCC
ATATACAACC TTGCAACAGG TAACTTCACC AATTACAGGA ATAACCACAC CTACCCTTTC
AATATGCAGT TGCCTGCCTG GGTCAATCAC CTGTATAAAG ACAATCGTAA CAGGATCTGG
ATCAGTACCT ACAGCGGATT ATTTCACTGG GACCGGCAAC GATTCACTTC CTTCAGTCAT
ACAGCGGATA CCGGCAGTAT CAACAGCAAC TCCGTGAACA TGGTTACGTC CGACAGTAAA
GGGAATATCT GGGTCGTTAC AGAGCAGGGA CTGGATCAGT TCCAGGAAAA AACAAAGACT
TTCCTGCACC TGAACCGGCA ATATGAACTA CCGGCATCCA TGAAATCCAT CGTCTGCGAT
ATGCAGGATA ACCTGTGGCT GGGAACCAAC GAAGGACTCA TCTTCCTCCA ACCTGCCACA
CAGAAAATCC ACCTGTATGA CAAGAATGAC GGTCTGCCGG AAAAGACCTT TTTCCAGAAA
GCAGCGACCC GTGCGGGCAA TGGCTGGCTG TATTTCGGTG GACCAAAAGG ACTCAGCCGC
TTCAATCCGG CTACAATCAC GGCCCTGGAC TTACCCGCAC GTTTTTATTT CAGTCACCTG
TACATCTTCG GAGAAGAGCA ACAGCCGGGT AAAGCCAATA GTGTGCTAAG CAGGAACCTG
CATCTGACAG ATACGATCAC CCTTACCCAG AAACAGTCAT TTTTTACCAT TGAATTTGCG
GCTATCAATC TGTATGCGCC GCAGAAGATA AAGTATAGTT ATAAACTGGT CAACCAGTTC
TCGGACTGGA TCAACGTCAC AGATGAACGA AAGATATCCT TTGCACATCT TCCGCCCGGC
ATATACGAAC TACAGGTACG TTACACCGAT ATCTACGGCA ACTGGCTTCC TCCTGCCAAA
GCCCTTACCA TCAGCATACT GCCCTACTGG TGGCAAACCT GGTGGTTCAG GATGTTAGCA
TTGCTGGCAT TAGCACTGGG TGTGACAGGT ATATTCTACT GGCGTGTAGC CAGGGTAAAA
AGAAGAAACC GTCAACTGAA AGCAGAGGTA AGAAGACAAA CGGCCCGTTT GCAGGAGTCT
AACGCCTCTC TCGTAGAACA GCACGATAAA ATTGCCTTAC AAAAGGAAAA ACTGGAACTT
TCTTATGCGG AAATCGTGCG GCAGACGGAC AAGATCCTTG ATCAGCAGCA ACAGATCTCC
AGTCAGAATA AAGAACTGGA AATGGCCGTC ACCCAACTGG AGAAACTAAA TACCTCCAAG
GACTACTTCT TCTCCATACT GGCACATGAC CTGAAAAACC CGGTAGCCGC ACTGAAAGAA
CTCTCCGGTT ACCTGTATGG TCACATGCCG GAAATGGAAG CCGGCACCTT ACGCCAGTAC
CTGAAAAACA TGCACAGTTC ATCTATCCAT GTATTCGAAT TACTGGTAAA TCTGCTCAGC
TGGTCTATGT CACAATCCCG GCACATGCAA TTGCAACCTG CCGCCTGTAA TGTGGCAGCG
ATGACTGCGA ATATCGCCGC CTTACTGGAA CCGGATCTAC ATAAAAAGAA TATTAAACTA
CAAAATGAAG TAACGGACTG CTGGATTTAT GCCGATCCGC AGATGCTGGA AGTGATCATC
AGAAACCTGT TATCCAACAG CATCAAATTC ACGGACTATG GCGGTCATAT AAAGATCAGC
GCTAATGAAA AGGACCAGCA GGTCACACTA GATGTTGCGG ATGATGGTAT CGGCATGTCT
GATAATACCC TGGAACATCT CTTTGAGATT GACAAACAGG AAGTCAGCAG AGGCACTGCC
GGAGAAAAAG GTACGGGATT GGGATTAGTG ATTGTAAGAG ATTTCCTGTA TGCAAATAAA
GGCTGTATTA CGGTCGAAAG TCAGGAAGGA AAAGGAAGTC TGTTCTCCAT CACCCTGCCT
GCAGGCATAC CGGATATCGT AGCAACAACA CAGTCGCCTG CACCTACAAA ACAGGAAGCT
GGGGTATGGC AGGAATTACC TGCGGAGAAA TTCATGCAGC TCAAAGGCAG AAAACTCTTA
TTGGTAGAAG ACAGTAAAGA AATGCGCGAT TATCTCCGCC TGATCCTCTC CGATATCTTT
GAAATCTTTG AAGCGGAAGA CGGCCATGCA GGGTATGCAC TCGCAAGAGA AATCATGCCT
GCTGTTATCA TTGCCGACCT CTTAATGCCT GGCATTAATG GTATTGAGTT CTGTAAACAG
ATCAAATCAG ATGGTGCTAC CAGCCATATT CCGGTAGTCA TATTGACCAG CCAGGAAAAC
AGTACCATGC AGGCTGCCGG TTATGAAGCA GGGATAGAAG CCTATCTGGC TAAACCTGTC
AGTCCGGAGT TGCTGTCACA GGTTTTGCTG AACATCCTGA ACAAACAGGA CACCACCTAC
CAGCGCCTTC GCGAACAGAT CTTCAGCGAC ATGCCTTTGA CGGCTGAACT GCAACAGCTG
TCCGCAACAG ACCAGGAGTT TCTGAAACAA CTGATCCAGT TTATTGATAC AGAACTGGGC
AATCAGGAAC TGGATGCAAC GGTCATTGCG AAAAAACTCT ACGTCAGCAG AACCCTGCTG
TATAATAAAG TCAAAACACT CACCGGACAA ACCGTCCATG AATTCATCAA AGCCATCAGG
TTACGTAAAA GCGTACAGTT ATTGCTGGAA GGAGATCTGA GCATCAGCCA GATTGCTTTT
GAAGTTGGTT TTAACAGCCA TTCCTATTTC AATAAATGTT TTATCAAACA ATATGGGATG
GGACCTAAGG AATACCTGAC CCGTAAAAAA GCAGGCGTCA AATAG
|
|---|
| Protein sequence | MRISECKPAF LRISILILLI MTGTSIDASG QSANYNIYSI STDNGLPTND YQKIYYDTKG
FVWLASFDGL FRWDGYSITK YLHRENDSLS LNNNIVYAIF EDSQHRLWVG TIDGLNCYDP
ARNVFRRIPL NETHDKIPVN AILEDDDHHL WLGTSNGLCR LDPEQQKAEW YLGHGDENIL
FCLAQGPGHT LWAGTFNKGI VRFNTRTHLF NYLRNSAGNT DILPSNKIQS LLIDKQQRVW
VGTEDRGVAV LDIEGKRKAG FNPISGHTLS SHSNIRCLYE DKAGTVWIGI GREPLCFVRK
NELTPATINN HSQNGNLPLT SITSITEDDF GNTWFASAGN GIFTTNKNKN HFTNLLGSTN
ALPGLITTVI SAVHESRNGN IWIGTAGNGL IRYGQENGGN LQKTPLSGEL AINDIQEDKQ
GDLWMATWAD GLIRYTPGNG RIQRFTHNPA DSNSLVNNDV KALLADDSLL WIGTHGEGLA
IYNLATGNFT NYRNNHTYPF NMQLPAWVNH LYKDNRNRIW ISTYSGLFHW DRQRFTSFSH
TADTGSINSN SVNMVTSDSK GNIWVVTEQG LDQFQEKTKT FLHLNRQYEL PASMKSIVCD
MQDNLWLGTN EGLIFLQPAT QKIHLYDKND GLPEKTFFQK AATRAGNGWL YFGGPKGLSR
FNPATITALD LPARFYFSHL YIFGEEQQPG KANSVLSRNL HLTDTITLTQ KQSFFTIEFA
AINLYAPQKI KYSYKLVNQF SDWINVTDER KISFAHLPPG IYELQVRYTD IYGNWLPPAK
ALTISILPYW WQTWWFRMLA LLALALGVTG IFYWRVARVK RRNRQLKAEV RRQTARLQES
NASLVEQHDK IALQKEKLEL SYAEIVRQTD KILDQQQQIS SQNKELEMAV TQLEKLNTSK
DYFFSILAHD LKNPVAALKE LSGYLYGHMP EMEAGTLRQY LKNMHSSSIH VFELLVNLLS
WSMSQSRHMQ LQPAACNVAA MTANIAALLE PDLHKKNIKL QNEVTDCWIY ADPQMLEVII
RNLLSNSIKF TDYGGHIKIS ANEKDQQVTL DVADDGIGMS DNTLEHLFEI DKQEVSRGTA
GEKGTGLGLV IVRDFLYANK GCITVESQEG KGSLFSITLP AGIPDIVATT QSPAPTKQEA
GVWQELPAEK FMQLKGRKLL LVEDSKEMRD YLRLILSDIF EIFEAEDGHA GYALAREIMP
AVIIADLLMP GINGIEFCKQ IKSDGATSHI PVVILTSQEN STMQAAGYEA GIEAYLAKPV
SPELLSQVLL NILNKQDTTY QRLREQIFSD MPLTAELQQL SATDQEFLKQ LIQFIDTELG
NQELDATVIA KKLYVSRTLL YNKVKTLTGQ TVHEFIKAIR LRKSVQLLLE GDLSISQIAF
EVGFNSHSYF NKCFIKQYGM GPKEYLTRKK AGVK
|
|---|
| |