Gene Cpin_5379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5379 
Symbol 
ID8361556 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6880181 
End bp6881068 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content45% 
IMG OID644967526 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003125010 
Protein GI256424357 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAATAC TGAATACGAC TCAAAAAGTA CCTATTTATT CACTGAACCC GGACAAAACA 
GGTGATAAAC ACTTTAAGGT GTATCACTAT GAAGGTGGCC TGCCTGATCA GACCGACCTG
CTGGTGCCAC ACCGCAAAAG TCACTATCTG CTCGTTTTTA TAAGAAAGGC TGATAGTCGC
CAGTGGATAG ATATGACGCC TTACGAAGTA AAGAACAACA CCGTCTACTT CAGCGGTCCC
GATAACATGA TCGTAAAAGA AGGATTCAGT GAACTATGGA GTACCGGTAT CGCTTTTACA
CCGGAATTCC TGTCTTCCCA GGACAATGCC TCCCTGAATA ATCTTCCCAT CATCCGCAAT
CCTTATAATG GTCACGAACT GGCGCTGACA GCACCCGATA TATTATTTAT AGAAGAGATC
ATCAGTAAGA TCCGGCTGGA ATATGAACAA TCCGGAGAAT GGCAACAACG TATGTTAGCG
GCTTATCTGA CGGTATTGCT GACCTATCTG AGCCGCCTGT ATACAGAACA GTACAAGGGG
AAAGATACCT CCACAGAAAG ACAATTATTA AAGCAGTTCC AGGCGAAGAT CAACGGGTAC
TTCCAGCAAT ACCATGAAGT TGCGGACTAT GCTGCCATGC TACACATCTC TGCCGGGCAT
TTAAGCGAAG TGATCAAAAA TCAGAGCGGT AAACCCGCTA TCAAACACAT ACACGAACGC
CTTGTAATGG AAGCCAGAAG ACTGCTCTTT CACACCAATA ACTCACTCAA GGATATCGCC
TTTGACCTGG GTTTCTCTGA TGCCTCCTAC TTCAACCGCT TCTTTAAAAG AGAAACAGGG
GTAACCCCAG CCGGCTTCCG GACAGAAATC CGCAAAATGT ACCATTAA
 
Protein sequence
MQILNTTQKV PIYSLNPDKT GDKHFKVYHY EGGLPDQTDL LVPHRKSHYL LVFIRKADSR 
QWIDMTPYEV KNNTVYFSGP DNMIVKEGFS ELWSTGIAFT PEFLSSQDNA SLNNLPIIRN
PYNGHELALT APDILFIEEI ISKIRLEYEQ SGEWQQRMLA AYLTVLLTYL SRLYTEQYKG
KDTSTERQLL KQFQAKINGY FQQYHEVADY AAMLHISAGH LSEVIKNQSG KPAIKHIHER
LVMEARRLLF HTNNSLKDIA FDLGFSDASY FNRFFKRETG VTPAGFRTEI RKMYH