| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5340 |
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| Symbol | |
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| ID | 8361517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6819887 |
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| End bp | 6820540 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644967488 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003124972 |
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| Protein GI | 256424319 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.453489 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.10795 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGCGTATCT TGCTAAATAT TTGCTTATTA TTATTGACGC AGAGGGACCA TCCACTATTT
CATCGCGTAC TACCGGACAT TGAAAAGATT TTAGTACGAG CAGCCGCTGA AGGCGACCGG
GATGCTTATG GACAGCTATA TACGCATTAC TACCCCAATC TACAGGTAGC CATCACCTTT
ATCACACAGG ACAGGGACGA AACAGACGAA TTGCTCCAGG AAACTTTTCT GCGGATATGG
AAGACCCGCG AGAAGCTGGT ATTGGTGAAA TCGTTTGAAA ATTATGCATT CAGGATTGCC
AGAAACATTT TATTCGACCA GCTCAGGCGT AAAAAAGTAC ACCTGAAAGC CATTGAAGCT
ATCGCACAAC GAGCCGCTAT AGAAGAAAGC AGCGGCGAAG GACCTTTAGT ATACAAAGAA
CTGCATGACA TGGCCATCAG AGCCATCAAC GAGCTGGAGC CCCGGAAACG GGAAATCTTC
CTGTTACGTA CAGAAGAAGG TCTCAGTTTC GAAGAAATAG CCGCCCGGTA TAATATGGCG
GTTGTGACTG TAAAGAAACA TTATTATGCT GCCTTCCATG TCTTAAAGAC CATCCTGGAA
CAACACGGAG GCATGGTATC CCTTCTCTTT TTATTGTGGT TGCGGGGTAA ATAA
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| Protein sequence | MRILLNICLL LLTQRDHPLF HRVLPDIEKI LVRAAAEGDR DAYGQLYTHY YPNLQVAITF
ITQDRDETDE LLQETFLRIW KTREKLVLVK SFENYAFRIA RNILFDQLRR KKVHLKAIEA
IAQRAAIEES SGEGPLVYKE LHDMAIRAIN ELEPRKREIF LLRTEEGLSF EEIAARYNMA
VVTVKKHYYA AFHVLKTILE QHGGMVSLLF LLWLRGK
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