Gene Cpin_5317 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5317 
Symbol 
ID8361494 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6791763 
End bp6792635 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content44% 
IMG OID644967465 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003124949 
Protein GI256424296 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.803525 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGTA TAGACAAATA TGAAGGACTA TATGGCGACC GGGATGCTAA ACCCGATGCG 
GGATATATTT TTTCTGAACT GCTGGGTACA AGGAGCTGGA AGTTTGACTG GAATATCGAA
CCTCATATAC ATCCGTCTAT CTACCAGTTG TTTTTCTTTG AGGAGGGGAA GCTGACTTTT
TTTGAGGCGG ATAGTCAGCG GGAATTGCAG ACTCCCTGTA TGTTATTGAT CCCACCTATG
GCACTACATG GATTCCGGTA TGAAACTGTC GCCGGCGGCA GGATATTGAC ATTGTCGGAT
GTCATGCTGG ATACACTGTT TCCTGAGTCA GCATTACTGG CACCCATGCT GACAACAATA
CGGTGTTTTG CTGACTTCAA TGGTCCTTAT TCCGCTGAAG ATATAGTAGC ATTGATAAAG
GCAGTAGATA AAGAGTTGTT TGGTGATCTG CCCGAAAAAA AGGTGATGCT GCGTATCTGT
TTACAGCAAT TGTTTTTGGC CGTGTATCGT TTATGGCAGG ACCAGCAGTC AGGCAATACC
TTATCTGACA ATCATTCCCT GGGTTATTTC AGGAAGTTTC AACAGCGGAT ACGGGAAGAA
GGTCTTAGGT ATACGATTGC ACAATTCGCA GCAGAACTGG GGATTACTAC CGTGCATCTT
AATCGTATTT GCCGGGAGGT GGTGGGTAAG TCTGCCGGTC AGCTGGTACA CGATCATATT
TTAGAAGAAG CGAAAAAGTA TCTGACTTAT ACTTCTTATA CCGTTTCAGA AATTGCCTAT
CTGCTCAACT TTGAATATCC GAATTACTTT GCGAGGTTCT TTAGAAAGCA TGCAGGAGTT
TCTCCGAAGG AGTTCAGAAC AATTAGGAAT TAG
 
Protein sequence
MKRIDKYEGL YGDRDAKPDA GYIFSELLGT RSWKFDWNIE PHIHPSIYQL FFFEEGKLTF 
FEADSQRELQ TPCMLLIPPM ALHGFRYETV AGGRILTLSD VMLDTLFPES ALLAPMLTTI
RCFADFNGPY SAEDIVALIK AVDKELFGDL PEKKVMLRIC LQQLFLAVYR LWQDQQSGNT
LSDNHSLGYF RKFQQRIREE GLRYTIAQFA AELGITTVHL NRICREVVGK SAGQLVHDHI
LEEAKKYLTY TSYTVSEIAY LLNFEYPNYF ARFFRKHAGV SPKEFRTIRN