Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5305 |
Symbol | |
ID | 8361482 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 6775103 |
End bp | 6777475 |
Gene Length | 2373 bp |
Protein Length | 790 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644967453 |
Product | PfaD family protein |
Protein accession | YP_003124937 |
Protein GI | 256424284 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0331] (acyl-carrier-protein) S-malonyltransferase |
TIGRFAM ID | [TIGR00128] malonyl CoA-acyl carrier protein transacylase [TIGR02814] PfaD family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.108741 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTGCTT ATTTGTTCCC CGGCCAAGGC TCTCAGAAAA GAGGGATGGG CGAAAAATTG TTTGATAAAT ATACTTCACT GACGGAAGAG GCAAGTGAAA TACTGGGTTA TAATATCAGG GAATTGTGTG TGACGGACGA GCACCGTTTA CTCAATCAGA CACAGTATAC GCAGCCTGCA CTATATGTGG TAAATGCGTT GTCATACCTG GACAGACTGG ATACTATGCC TAAACCTGAT TTTGTACTGG GGCATAGCCT GGGTGAATAT GTGGCATTGT TTGCAGCAGG TGCATTCTCT TTTGAAACTG GTCTGAAGCT GGTTAAACAG CGCGCAGAGA TTATGGGACG TGTGAAAAAT GGTGGAATGG CTGCTTTGCT GGGATTAAAG ATGGATACAG TCAGAAAGAT ACTTGTCGAA AGTAGCTACA CTAGTATTGA TATCGCTAAT TACAACTCTG CGGAACAGAT TGTTATTTCC GGATTACGGG ACGATATTAT CAGTGCCCAG AAAGTATTTG AAGCCAATGG TGCAAAGCTC TATTATCCAT TGAATGTCAG TGGTGCTTTT CACTCAAGAT ATATGAAGGA AGCGCAGGAT GCCTTTGCCC TATGTGTATC CAGTGTACAT TTTTCTCCTT TGCAGATACC CGTTATTTCC AATGTGCTGG CTCGTCCCTA CGAGGATGGC CGTATCGGGG AATTACTGAC GACACAGATT ACCAGTCAGG TGAAATGGTA TGAGAGTATT TCCTTTTTGT TGCATAATGG TGTAGCTACC TTTCAGGAAG TAGGACCTGG CGATGTACTG ACGAAGATGC AGGGATTTAT TGCCGCCGCA CCTATGTCGG CAGCAGCTGG TGGTTTTGCA CCCGTACAAC AGCCGCAAAA GCAGGTAGAA CAAACTGCGC CGGCAACCAC ACAGGAAGAG ATAATAACGG ATGAATTGCC TGCTTATTAC AGGCAATTGA CAGGGGAAGA AGTGGCGGAA GGTATTGATC CCTTATTTAC AGCAACACAC CTGGGCAGTG CCGCTTTTCG TAAGCTATAT AAGGTAAAGT ATGCGTATGC GGCAGGATCG ATGTTTTATG GCATCGCTTC GAAAGAGTTG GTGGTAAGGA TGGGCCGGGC CGGTTTATTG AGTTTTTATG GATCTAAGGG AAAGAGTCTG GCAGAAATAG AAGAAGCGAT CCGTTATTTT CAGACCTTAC CAGCGCCTTT TCCTTACGGC ATTCACGTCT GGCATCAGCC GGATGATGCC GCGGCAGAGA TGGCACTCGT CGCGCTGCTA CAAAAGCATC AGGTAAGCGT TGTGGAAGCA GGTGGATACA CTGCGCTGAG TGAGGCAATT GTATACTATC GTGTATCTGG TCTCGTAAAG GATAGAAACG GACGTACCAC TATCCGGCAT CATATACTTG CCAAAGCGGC CCGTCCTGAC ATCGCAGCGC TCTTTCTCCA GCCTCCACCA GAGAAGACAG TGGAACAACT TGTTGCCGCA GGTAAAATCA CGAAGGAACA GGCGCTGATG GCTGTGACGA TACCTATGGC AGACGATATC TGTGCAGAAG CGGAGGGAAC CGGTATGGGA GGACGTAAAA TGCCTTATGC ATTGGTAACG GCCTTCAGAC AGCAGAGGGA CCAGCTCGCA CGTCGTTTCG GGTATCAGGA GGCGCCACGC ATCGGACTGG CAGGAGGCAT AGGCACACCG GAGGCCGCGG CAGGAGCATT CCTCACAGGA GCGGAATTTA TTCTGACAGG CTCGGTGAAC CAATGTACAG TAGAAGCAGG TACCAGCAGG GAGGTAAAGG ATATGTTGCA GGAGACGGGT ATCCAGGATA CAGATTATGT ACCGGGAGAA GAGTTGTTTG AATTTGGTGC ACGTATACAG GTGCTGAAGA AAGGACTGTT TTTCCCGGCC AGAGCAGCCC GTTTGTATGA GTTTTACAGG ATGTATACCT CCCTTGATGA ACTGGATGAA AAAGACAGGA CGCAGCTTGA AACGCGTTAT TTTGGTGCAA CGCTGGAGGC CGTTTTCGAG CAGCTGAAAC AAACGCTCAG TCCAGCTACA ATTGCCAGTG CTACGCAGCA TCCGCGGCAT AAGATGGCAC TGGTATTCAG ACAATATTTT GAGAAAAGTA TGAAAGCGGC ACTTACAGGC GATCAGGCTG CCCGGCTGGA TTACCAGGTA CAAAGCAGTT CTGCGCTTGG GTCGTTTAAT GAATGGGTAA AAGATACCCC TTTAAGACAC TGGAATAACC GGCATCCGGA TAGTATTGCC CTGTTGCTGA TGACCGGTGC GGCGGCCTAT TTATCCCGTT TTTATGATCA TGCACTTGTT GCCCGGGAAG GCCGCTCCAT GATTCCGGCA TAA
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Protein sequence | MIAYLFPGQG SQKRGMGEKL FDKYTSLTEE ASEILGYNIR ELCVTDEHRL LNQTQYTQPA LYVVNALSYL DRLDTMPKPD FVLGHSLGEY VALFAAGAFS FETGLKLVKQ RAEIMGRVKN GGMAALLGLK MDTVRKILVE SSYTSIDIAN YNSAEQIVIS GLRDDIISAQ KVFEANGAKL YYPLNVSGAF HSRYMKEAQD AFALCVSSVH FSPLQIPVIS NVLARPYEDG RIGELLTTQI TSQVKWYESI SFLLHNGVAT FQEVGPGDVL TKMQGFIAAA PMSAAAGGFA PVQQPQKQVE QTAPATTQEE IITDELPAYY RQLTGEEVAE GIDPLFTATH LGSAAFRKLY KVKYAYAAGS MFYGIASKEL VVRMGRAGLL SFYGSKGKSL AEIEEAIRYF QTLPAPFPYG IHVWHQPDDA AAEMALVALL QKHQVSVVEA GGYTALSEAI VYYRVSGLVK DRNGRTTIRH HILAKAARPD IAALFLQPPP EKTVEQLVAA GKITKEQALM AVTIPMADDI CAEAEGTGMG GRKMPYALVT AFRQQRDQLA RRFGYQEAPR IGLAGGIGTP EAAAGAFLTG AEFILTGSVN QCTVEAGTSR EVKDMLQETG IQDTDYVPGE ELFEFGARIQ VLKKGLFFPA RAARLYEFYR MYTSLDELDE KDRTQLETRY FGATLEAVFE QLKQTLSPAT IASATQHPRH KMALVFRQYF EKSMKAALTG DQAARLDYQV QSSSALGSFN EWVKDTPLRH WNNRHPDSIA LLLMTGAAAY LSRFYDHALV AREGRSMIPA
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