Gene Cpin_5305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5305 
Symbol 
ID8361482 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6775103 
End bp6777475 
Gene Length2373 bp 
Protein Length790 aa 
Translation table11 
GC content48% 
IMG OID644967453 
ProductPfaD family protein 
Protein accessionYP_003124937 
Protein GI256424284 
COG category[I] Lipid transport and metabolism 
COG ID[COG0331] (acyl-carrier-protein) S-malonyltransferase 
TIGRFAM ID[TIGR00128] malonyl CoA-acyl carrier protein transacylase
[TIGR02814] PfaD family protein 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.108741 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGCTT ATTTGTTCCC CGGCCAAGGC TCTCAGAAAA GAGGGATGGG CGAAAAATTG 
TTTGATAAAT ATACTTCACT GACGGAAGAG GCAAGTGAAA TACTGGGTTA TAATATCAGG
GAATTGTGTG TGACGGACGA GCACCGTTTA CTCAATCAGA CACAGTATAC GCAGCCTGCA
CTATATGTGG TAAATGCGTT GTCATACCTG GACAGACTGG ATACTATGCC TAAACCTGAT
TTTGTACTGG GGCATAGCCT GGGTGAATAT GTGGCATTGT TTGCAGCAGG TGCATTCTCT
TTTGAAACTG GTCTGAAGCT GGTTAAACAG CGCGCAGAGA TTATGGGACG TGTGAAAAAT
GGTGGAATGG CTGCTTTGCT GGGATTAAAG ATGGATACAG TCAGAAAGAT ACTTGTCGAA
AGTAGCTACA CTAGTATTGA TATCGCTAAT TACAACTCTG CGGAACAGAT TGTTATTTCC
GGATTACGGG ACGATATTAT CAGTGCCCAG AAAGTATTTG AAGCCAATGG TGCAAAGCTC
TATTATCCAT TGAATGTCAG TGGTGCTTTT CACTCAAGAT ATATGAAGGA AGCGCAGGAT
GCCTTTGCCC TATGTGTATC CAGTGTACAT TTTTCTCCTT TGCAGATACC CGTTATTTCC
AATGTGCTGG CTCGTCCCTA CGAGGATGGC CGTATCGGGG AATTACTGAC GACACAGATT
ACCAGTCAGG TGAAATGGTA TGAGAGTATT TCCTTTTTGT TGCATAATGG TGTAGCTACC
TTTCAGGAAG TAGGACCTGG CGATGTACTG ACGAAGATGC AGGGATTTAT TGCCGCCGCA
CCTATGTCGG CAGCAGCTGG TGGTTTTGCA CCCGTACAAC AGCCGCAAAA GCAGGTAGAA
CAAACTGCGC CGGCAACCAC ACAGGAAGAG ATAATAACGG ATGAATTGCC TGCTTATTAC
AGGCAATTGA CAGGGGAAGA AGTGGCGGAA GGTATTGATC CCTTATTTAC AGCAACACAC
CTGGGCAGTG CCGCTTTTCG TAAGCTATAT AAGGTAAAGT ATGCGTATGC GGCAGGATCG
ATGTTTTATG GCATCGCTTC GAAAGAGTTG GTGGTAAGGA TGGGCCGGGC CGGTTTATTG
AGTTTTTATG GATCTAAGGG AAAGAGTCTG GCAGAAATAG AAGAAGCGAT CCGTTATTTT
CAGACCTTAC CAGCGCCTTT TCCTTACGGC ATTCACGTCT GGCATCAGCC GGATGATGCC
GCGGCAGAGA TGGCACTCGT CGCGCTGCTA CAAAAGCATC AGGTAAGCGT TGTGGAAGCA
GGTGGATACA CTGCGCTGAG TGAGGCAATT GTATACTATC GTGTATCTGG TCTCGTAAAG
GATAGAAACG GACGTACCAC TATCCGGCAT CATATACTTG CCAAAGCGGC CCGTCCTGAC
ATCGCAGCGC TCTTTCTCCA GCCTCCACCA GAGAAGACAG TGGAACAACT TGTTGCCGCA
GGTAAAATCA CGAAGGAACA GGCGCTGATG GCTGTGACGA TACCTATGGC AGACGATATC
TGTGCAGAAG CGGAGGGAAC CGGTATGGGA GGACGTAAAA TGCCTTATGC ATTGGTAACG
GCCTTCAGAC AGCAGAGGGA CCAGCTCGCA CGTCGTTTCG GGTATCAGGA GGCGCCACGC
ATCGGACTGG CAGGAGGCAT AGGCACACCG GAGGCCGCGG CAGGAGCATT CCTCACAGGA
GCGGAATTTA TTCTGACAGG CTCGGTGAAC CAATGTACAG TAGAAGCAGG TACCAGCAGG
GAGGTAAAGG ATATGTTGCA GGAGACGGGT ATCCAGGATA CAGATTATGT ACCGGGAGAA
GAGTTGTTTG AATTTGGTGC ACGTATACAG GTGCTGAAGA AAGGACTGTT TTTCCCGGCC
AGAGCAGCCC GTTTGTATGA GTTTTACAGG ATGTATACCT CCCTTGATGA ACTGGATGAA
AAAGACAGGA CGCAGCTTGA AACGCGTTAT TTTGGTGCAA CGCTGGAGGC CGTTTTCGAG
CAGCTGAAAC AAACGCTCAG TCCAGCTACA ATTGCCAGTG CTACGCAGCA TCCGCGGCAT
AAGATGGCAC TGGTATTCAG ACAATATTTT GAGAAAAGTA TGAAAGCGGC ACTTACAGGC
GATCAGGCTG CCCGGCTGGA TTACCAGGTA CAAAGCAGTT CTGCGCTTGG GTCGTTTAAT
GAATGGGTAA AAGATACCCC TTTAAGACAC TGGAATAACC GGCATCCGGA TAGTATTGCC
CTGTTGCTGA TGACCGGTGC GGCGGCCTAT TTATCCCGTT TTTATGATCA TGCACTTGTT
GCCCGGGAAG GCCGCTCCAT GATTCCGGCA TAA
 
Protein sequence
MIAYLFPGQG SQKRGMGEKL FDKYTSLTEE ASEILGYNIR ELCVTDEHRL LNQTQYTQPA 
LYVVNALSYL DRLDTMPKPD FVLGHSLGEY VALFAAGAFS FETGLKLVKQ RAEIMGRVKN
GGMAALLGLK MDTVRKILVE SSYTSIDIAN YNSAEQIVIS GLRDDIISAQ KVFEANGAKL
YYPLNVSGAF HSRYMKEAQD AFALCVSSVH FSPLQIPVIS NVLARPYEDG RIGELLTTQI
TSQVKWYESI SFLLHNGVAT FQEVGPGDVL TKMQGFIAAA PMSAAAGGFA PVQQPQKQVE
QTAPATTQEE IITDELPAYY RQLTGEEVAE GIDPLFTATH LGSAAFRKLY KVKYAYAAGS
MFYGIASKEL VVRMGRAGLL SFYGSKGKSL AEIEEAIRYF QTLPAPFPYG IHVWHQPDDA
AAEMALVALL QKHQVSVVEA GGYTALSEAI VYYRVSGLVK DRNGRTTIRH HILAKAARPD
IAALFLQPPP EKTVEQLVAA GKITKEQALM AVTIPMADDI CAEAEGTGMG GRKMPYALVT
AFRQQRDQLA RRFGYQEAPR IGLAGGIGTP EAAAGAFLTG AEFILTGSVN QCTVEAGTSR
EVKDMLQETG IQDTDYVPGE ELFEFGARIQ VLKKGLFFPA RAARLYEFYR MYTSLDELDE
KDRTQLETRY FGATLEAVFE QLKQTLSPAT IASATQHPRH KMALVFRQYF EKSMKAALTG
DQAARLDYQV QSSSALGSFN EWVKDTPLRH WNNRHPDSIA LLLMTGAAAY LSRFYDHALV
AREGRSMIPA