Gene Cpin_5280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5280 
Symbol 
ID8361457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6696121 
End bp6696663 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content46% 
IMG OID644967428 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003124912 
Protein GI256424259 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.837765 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.127593 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAATTA ATAGTAAACA TAGTCCTTCA TCTGACCCTG AGATGTATTT TGATAGGTTA 
TTCAAAGAGA CCTACGCTAA TACCGTCGCA TACCTGGAAA AAATCAGCAG TGATAAAGAG
CTGGCCCTTG ACCTTGCACA GGAGGCTTAC CTGAAGGTCT GGCAGAAGCT GGATTTACTG
CCGGAAGACG GTGAAGAGAT GCTGAGATAT ATTCTGATCA TCGCACGTAA CTGTTTCCTG
GATCACCTGA AAGGTATGCT GAAAGAAAAG AAACAACAGG ACGCCTACGC CACTGTATAT
ATTGAAACAA GTGCCGCCGC TAACTACATG GAAATAAAAG AGCAGCAGCA GATTATCGAC
CATACCATTA ATACACAGGA AGCCTCCGCC CGCCGTTTCT ATCTCCTGAA CCGCGAGGAA
GGTCTTACTT ACAAAGAGAT CGCCCTGCAG GAAGGCGTAT CTGAAAAAAC CGTGGAGCGC
TATATCGGAA GAGTGCTTCG TACCCTGCGT ACCCGCCTTG CCAGTTTTCT TTTTCTTTGG
TAA
 
Protein sequence
MRINSKHSPS SDPEMYFDRL FKETYANTVA YLEKISSDKE LALDLAQEAY LKVWQKLDLL 
PEDGEEMLRY ILIIARNCFL DHLKGMLKEK KQQDAYATVY IETSAAANYM EIKEQQQIID
HTINTQEASA RRFYLLNREE GLTYKEIALQ EGVSEKTVER YIGRVLRTLR TRLASFLFLW