| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5272 |
|---|
| Symbol | |
|---|
| ID | 8361449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6676695 |
|---|
| End bp | 6678536 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967420 |
|---|
| Product | OmpA/MotB domain protein |
|---|
| Protein accession | YP_003124904 |
|---|
| Protein GI | 256424251 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00153444 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0517848 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAA TACATTACGC GATCGGTCTA TGTTTTTTGC TTACTGCTGT TTCTGCAAAG
GCGCAGTATA TCATTAAGGC GGCTGATAAA GCATACGATA ACTATAAGTA CGCAGAAGCA
ACTGACCTTT ACGAGAAGGC GTATAATAAA AAGGCGAGTC TGCACGCTGC AGAACGCCTT
GCAGACTGTT ACCGTTTTAA TAATAACTAT CCGGAAGCAG AACGCTGGTA TGCAGTGGCG
ACCGGTATGA GTGGCAGTAA GGCGGAGAAT ACCTACTATT ATGCCCGTGC TTTACAGAAT
AATTCAAAGT ATCCTGAAGC GCGTGTACAA TACGAGAAGT ATGCAGCCGC AGCAGGAACT
ACGGTTACAC CTGAATTACA GCGTACCTGG ATCGCTTCCT GCGATTCTGC GATCAGCTGG
ATGCAGACAC CGGATCGTTT GAAGATAGAT AACTATAAGG TCCTGAATTC CGGCAAATCG
GACTGGAATG CGGTGCCATA TATGGGAGGT GTGGTGTTTA CGTCCGACCG TTCTGCGGCT
GGCGCACATC AGCCTAAAAA GCACCATTTT TTCCTGCGTT TTGATACCAG GGTAAAACCG
GATCCTCTGA CGAGCAGCTG GACGGGTAAT GACTACCTGC ATCTTTTCCA GAAACCGGCA
ATTGGAGATA GTATATCGCT GTTTCCATTA CATACCGGTA CCGGCTATCA TGTTGGTTCC
GCCAGTTTTA CGAGAGACGG GAAAGAGATG TTCTTTACCC TGACGCGTAT TCCCGGCAGG
GGAGACCGCG CAAAGGGTAA AGCGACTACT GTCAATGTAG AGATCTACAG CAGCAGGCAG
GATGCTTCCG GCAAATGGTC GGCACCTGTG GCTTTTTCCC ATAATAACGT AAATACTTAT
TCTGTAGGTG ATCCGTTTAT CACACCGGAT GGTATGGCGT TATACTTTGC TTCCAATATG
CCGGGCGGCG CTGGTGGCAC TGACCTGTAC ATGTGTTACC GCACTGCTAC AGGCGAATGG
GGCCCTGCAC TGAACCTGAA AGCCATCAAT ACGGCAGGCA ATGAACGTAG TCCGGCGATC
GTAAGAGGAG ATATCCTGTA TTTCTCCAGT GATGGCCGTA TTGGTATGGG TGGTCTTGAT
GTTTATCGTG TAAAACTGGA TAAGTATGAG GATGGTCAGT TGACCGGTAA GGTCAGGAAT
ATGCGTTATC CGTTGAATTC GCCACAGGAT GATTTTGCCT TTGGTTTAAC TGATGATGGT
CTTGCATATC TGTCTTCCAA CAGGAATGGC GGTAGTGGCA GTGATGATAT TTATGCGGTA
GTGTCCATGC CGGAAGAGGA GATACCTGCG CATATTCCCG ACAGACCAAT CAAGGATGAC
ACGCTTCGTA AGGTTTCAGG TGATGTAATT GATACGGTAG CAGCCCCTGT CGTAGCTATT
CAGACACCAG ATCCGGCGCC GGTAGCAACG CCGTCGGCTG ATCCTGACAA GTCAGGATTA
CTGGATATCT ATTTTGATTT CAATAAGGCA GCGATCAATC CGGCAGCAGC ACAGGTACTG
GATGGGCTGG TAAAGACGAT ACAGGAAAAT CCTGATAAAT CAGTAGAGCT GAGTGCGCAT
ACAGATTCCC GTGGTAATGA CGCCTTTAAC CTGGCACTGT CTCAGAAACG TGCAACATCG
GTGATGAATT ACCTGATATC CAAAGGTGTG GCGAAGAGCA GGATTTCTGC CAAAGGATAC
GGCGAAACGA AGCTGCTGAA CAGGTGTGGC AATGGTGTAA ACTGTAGTGA AGATGAGCAT
AAGCTGAACA GAAGAACGGA GTTTAAACTG GTGAAGAAAT AG
|
|---|
| Protein sequence | MKTIHYAIGL CFLLTAVSAK AQYIIKAADK AYDNYKYAEA TDLYEKAYNK KASLHAAERL
ADCYRFNNNY PEAERWYAVA TGMSGSKAEN TYYYARALQN NSKYPEARVQ YEKYAAAAGT
TVTPELQRTW IASCDSAISW MQTPDRLKID NYKVLNSGKS DWNAVPYMGG VVFTSDRSAA
GAHQPKKHHF FLRFDTRVKP DPLTSSWTGN DYLHLFQKPA IGDSISLFPL HTGTGYHVGS
ASFTRDGKEM FFTLTRIPGR GDRAKGKATT VNVEIYSSRQ DASGKWSAPV AFSHNNVNTY
SVGDPFITPD GMALYFASNM PGGAGGTDLY MCYRTATGEW GPALNLKAIN TAGNERSPAI
VRGDILYFSS DGRIGMGGLD VYRVKLDKYE DGQLTGKVRN MRYPLNSPQD DFAFGLTDDG
LAYLSSNRNG GSGSDDIYAV VSMPEEEIPA HIPDRPIKDD TLRKVSGDVI DTVAAPVVAI
QTPDPAPVAT PSADPDKSGL LDIYFDFNKA AINPAAAQVL DGLVKTIQEN PDKSVELSAH
TDSRGNDAFN LALSQKRATS VMNYLISKGV AKSRISAKGY GETKLLNRCG NGVNCSEDEH
KLNRRTEFKL VKK
|
|---|
| |