| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5263 |
|---|
| Symbol | |
|---|
| ID | 8361440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6667007 |
|---|
| End bp | 6667987 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967411 |
|---|
| Product | beta-lactamase domain protein |
|---|
| Protein accession | YP_003124895 |
|---|
| Protein GI | 256424242 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.000854827 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGAA GAACCCTCAT AAAGAGAATA GCTATTCTTG GCCTTGGCGC TACATTACCT
GTACACAAGC TGCTGGCCCG TTCCCTCAAA ACAGCAAGCG AGCGACCTTA TCACCGTTTT
CAGCTGGGCG ATCTGGAAAT GACAGTTGTT ACTGACGGGC ATATTGTCAT GAGCCCTGTG
CAGGACCATT TTGCACAGGA CGTACCTGCG GCAGAAGTAA CAAAACTGTT AGAAGGCAGC
TTTCGTTCTA CGAAGGCCGT CGATCTGGGT ATGAATATGC TGCTGATCAA GAAAGACAAA
GAAGTGATAC TGATAGATAC CGGTGCTGGC TTCGGATTCG GCCCTGATTG CGGTTGGCTG
CCACAGTCAT TAAAAGACGC GGGTATGGAT GTGAATGCAG TAACACAGAT TGTGATTACA
CATGCGCATC CGGATCATAT CGGCGGACTG TTCAGCCAGG ACGGGCAACT TGTCTTCCCG
CAGGCACAGG TGTATATGTC AGAGACGGAG CATCGTTTCT GGATGTCAGA TTATCCGGAT
TTCTCTAAAA GTAAATTTGG AAATAAAGCC TTGCTGGCAA AAATACTGGT CGCTACCAAG
CAGACCTTAA CTGCCCTGAA AGACCGCCTT CATTTCTTTG GTTACGAGGA AACTTTATTT
GGTTGTGTGC GTTTGCAGGC AGCGCCGGGT CATACACCAG GACACACATT GGTACGGGTA
TTCTCCGGCA ATGAGGAGAT CGTACATATC GCTGATCTGA TACATTCAGA TGTATTGTTA
TTCCCCCATC CGGAGTGGGG CTTTGATGGC GATACTGATT TTACACTGGC AGCAGCTACG
CGTAGAAAGG TGCTGGAATC CCTGACGAAA GACCGGACGA AGGTATTTTC TTATCACCTG
CCATGGCCCG GTATCGGACA TGTGAAAAAG AAAGACGAAG GCTTTACATG GATTGCCGAA
ACGTATGCAT TCCCTGATTG A
|
|---|
| Protein sequence | MERRTLIKRI AILGLGATLP VHKLLARSLK TASERPYHRF QLGDLEMTVV TDGHIVMSPV
QDHFAQDVPA AEVTKLLEGS FRSTKAVDLG MNMLLIKKDK EVILIDTGAG FGFGPDCGWL
PQSLKDAGMD VNAVTQIVIT HAHPDHIGGL FSQDGQLVFP QAQVYMSETE HRFWMSDYPD
FSKSKFGNKA LLAKILVATK QTLTALKDRL HFFGYEETLF GCVRLQAAPG HTPGHTLVRV
FSGNEEIVHI ADLIHSDVLL FPHPEWGFDG DTDFTLAAAT RRKVLESLTK DRTKVFSYHL
PWPGIGHVKK KDEGFTWIAE TYAFPD
|
|---|
| |