| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5260 |
|---|
| Symbol | |
|---|
| ID | 8361437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6658435 |
|---|
| End bp | 6660264 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644967408 |
|---|
| Product | Beta-N-acetylhexosaminidase |
|---|
| Protein accession | YP_003124892 |
|---|
| Protein GI | 256424239 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0488918 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.00217525 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAA GAATTGCATC TATTTTAGTC TTTTCTCTGG GAGTGAGTGG CGCTCATGCA
CAAAGCAACT ACTCCATCAT CCCGAAACCT GTTTCTGTAC AGGCTGCGAC CGGACATTTT
GCATTAGGTA AACAGACCGT ACTGGTGGCA GCAAGCGATG CCGCAAGAAA GAATGCGGAT
CTGTTCAATG AATTTCTCTG GAACCGTTAT GGTATCAAAC TGACCATCGC CCGTGAGGCC
AGCGGGAAGG CGATCGTACT GGACGACCAG GCAGATGCCG GCGCGCAGGA GGCTTATAGT
CTGACTGTGA CACCTGAGAA AATCACCATC AAGGGTGGCA GCGCAGGTTG TTTTTATGGG
CTGCAATCGG TATTGCAGCT GATCGAAACA CAAGACGGCG GACTCAGTGT ACCGGCAGTT
ACTGTTAGTG ACAAACCGGA ATTTGGTTAC CGTGGTGTGA TGATCGACGT AGCAAGACAT
TTCTTCTCCC TGGATGAAAT GAAGAAGATC GTGGATCTCC TGGCTTATTT TAAATTCAAC
AGACTGCATT GGCACCTGAC CGATGACCAG GGCTGGAGAC TGGAGATCAA AAAGTACCCG
AAACTGACCC AGGTATCCGC CTGGCGTGAT TCCAGTATTC TGAGACAGTA TGGCGATTAT
AAACCATTCG TGTATGACGG CGTGAAACAC GGCGGTTATT ATTCACAGGA AGAGGCGCGT
GAGCTGGTGA AATATGCTGC TGACCGTAAG ATCACGATTC TGCCGGAGAT CGAATTGCCA
GGCCACAGTA CTGCGGTATT GGCTGCTTAT CCGCAGTTTG GTTGTAAAGA TACCCTGTAT
CATGTGCCAG GTTACTGGGG CGTACATTAT GCGATCTATT GTCCGAAGGA AGAGACTTTT
AAATTCCTGG AGGATGTGCT GACTGAAGTC ATGGCGATCT TCCCGGGTGA GTACATCCAT
GTAGGTGGCG ACGAAGTACC GAAGGAGCAC TGGCAGGAGT CTAAATTTGC ACAGACCCTG
ATTGCGAAAC AGAAGCTGAA AGACGAGCAT GAGTTACAGA GCTATTTTAT TTCCCGTATC
GAGAAGTTCC TGAATAAGAA TGGCAGACGC CTGGTAGGAT GGGACGAGAT CCTGGAAGGT
GGATTAGCGC CTAATGCGAC TGTCATGAGC TGGAGAGGGG AGAAAGGCGG TATCGCAGCT
GCGAGAATGG GCCATGATGT GATTATGACG CCTAACAGCC ACTTGTATAT CGACCATTAT
CAGTCTAAAG ATAAACAGAA TGAGCCGACG GCTATTGGCG GTTTCCTGCC GTTAGAGAGA
GTGTACAGCT ACAATCCACG TCCTGATTCG CTGACGCCCG ATCAGCAGCA GCATGTACTG
GGTGTACAGG CAAACCTCTG GACAGAGTAT ATCGGTACCA ATAATAAACT GGAATATATG
CTGTTCCCGC GTATGCTGGC ATTGTCAGAG GTGGCATGGT CAGCGAAGGG GCAGCGGAAT
TATGAGGACT TCTCTACTGC GCGTCTGCCT TTACGTTTGC AGGAGCTGGA GCAGATGAAG
GTGTACTATC GTATTCCGGA GGCAAAGGTG ACTTTTGGCG CAGATGCAGC TGGCAGGAGA
ACTGCGGAGA TTATTCCTTT TGTAGCGAAC AGCAACGTGT ATTATACTGT TGACGGGCAT
AAGGCAGATC AGACTGCTAA CCTGTACAAC GGGGCGATAT TGCTGCCGGT GAAAGGGAAA
AGTGAGAAGC CGATGGTGTT GAATTATATT ATTGTAACAC CAGGAGGTAG AGTGAGTAAT
ATGTTTACGG TGCCGCTGGA GGGGAATTAG
|
|---|
| Protein sequence | MLKRIASILV FSLGVSGAHA QSNYSIIPKP VSVQAATGHF ALGKQTVLVA ASDAARKNAD
LFNEFLWNRY GIKLTIAREA SGKAIVLDDQ ADAGAQEAYS LTVTPEKITI KGGSAGCFYG
LQSVLQLIET QDGGLSVPAV TVSDKPEFGY RGVMIDVARH FFSLDEMKKI VDLLAYFKFN
RLHWHLTDDQ GWRLEIKKYP KLTQVSAWRD SSILRQYGDY KPFVYDGVKH GGYYSQEEAR
ELVKYAADRK ITILPEIELP GHSTAVLAAY PQFGCKDTLY HVPGYWGVHY AIYCPKEETF
KFLEDVLTEV MAIFPGEYIH VGGDEVPKEH WQESKFAQTL IAKQKLKDEH ELQSYFISRI
EKFLNKNGRR LVGWDEILEG GLAPNATVMS WRGEKGGIAA ARMGHDVIMT PNSHLYIDHY
QSKDKQNEPT AIGGFLPLER VYSYNPRPDS LTPDQQQHVL GVQANLWTEY IGTNNKLEYM
LFPRMLALSE VAWSAKGQRN YEDFSTARLP LRLQELEQMK VYYRIPEAKV TFGADAAGRR
TAEIIPFVAN SNVYYTVDGH KADQTANLYN GAILLPVKGK SEKPMVLNYI IVTPGGRVSN
MFTVPLEGN
|
|---|
| |