| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5234 |
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| Symbol | |
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| ID | 8361411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6616036 |
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| End bp | 6618693 |
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| Gene Length | 2658 bp |
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| Protein Length | 885 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644967382 |
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| Product | conserved repeat domain protein |
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| Protein accession | YP_003124866 |
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| Protein GI | 256424213 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.634416 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0000191517 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGATCCC GTTTGCTGCC TATGTTGGTA CTGCTTCACC TTATCTATTG TCGTATAACC
GCACAGGTGG CGGGTTTTAC GGTGCCTGAT ACCGTTTGCG TCAACCAGAC ATTTAATATA
CAGAATAATT CTACCGGGGG TACAACCTAT TTCTGGAACT TTTGCTCGGG CAGCCTGTTT
AGTACACCGG TGGTAACGCA TCTTACAAAT ATTAATGGTG CTTTACGTAC GCCTACTTTT
TTAGCAATTG CTGAGGATGC CGGTAATTAT TATGCATTTA TTACTAATAA TATCGGAGAA
CTGGTACGTT ACAGTTTCGG TAACAGTTAC CTGAATACGC CTACTGCGGA TAATTTCGGC
AGCCTGGGCG GAGTGATCCC TAACCATACA CAAGGGGTAC AGGTGATCCA GGATGGAAAC
AATTGGTATG TGATCATTGT GGGTGGTACC AGCGAGATAG CCCCTCGTAT CGTGCGTATC
AGTTTTGGGA ATGCGCTTTC CAATGCACCA GTATCGAGTG TGAACTGGGG CAATCTCGGG
AATATGGATT ACCCGCATGA CTTGTATATT ACCCGGCAAG GGAGTAATTA TTATGGCTTT
ACCGTCAATT TTCTGAGTAA TAGTGTAACC CGTTTTGACT TCGGTAACTC GGTTGCCAAT
ACACCTACAG CCATCAATCT CGGTAATGTG GGCAGTCTCA ACCATCCTAC CGGTATCTTC
GCTACACAGG ACAATGGCAA CTGGTATGTA TTCGTGACAA ACGAAGGAAC CAATAGCATT
TCCCGGATGG ATTTCGGTAA TTCGCTGGCC AATACCCCCA CGGGTGTGAA CCTTGGAGAC
GGTGGCGGTA TCATAGACGG ACCACGCGAT ATCTCCGTGA TCCGTGACTG TGGTAAGATC
TTCGGACTGG TCGTGAGTGC AGGTGCGTCC GATTTGACCA GGATCGATTT TACAGGTGGT
ATCACCAGCG GGTTTACGGC AACGTCTCTT AATTCAGGTG GTGGGTTTAG TTTCCCGCAT
TCCATCTCCA CTATCTTCCG GGAAGGCAAT GACCTTTACG CATTCGTGAC CAATGCTACC
GGACAGAAGA TATCGAGATT TGTTTTTAAC AGTTGTAATA CTTCGAGTAT CAGTAACTCT
ACTTTACAAA ATCCTCCGCC TGTTTCTTAT ACGCAGGCAG GCACCTATAC TATTAACCTG
CTGATGAACG AATCATCGCC TACACAAAGC ACATTTTGCA GAACAGTTGT CGTACTCAAT
CCGCCTACAG TGAATCTCGG TCCGGATCAG GCAATCTGTG AAGGTGCCAC CAGCGTACTG
GATGCCGGCG CCGGATTTAG CAGCTACCTG TGGAGTACCG GAGAAACATC TCAGACAATT
ACAGTCAGCG ACCCTGGTAC CTATAGCGTT GTCGTCAGCA ATGGTGGTTG TACGGCGACG
GATGCAGTGG TGGTAACCAG AAGCCAGGTT TTGAATATGA CCGCCACCGT GACAGACGTT
ACCTGCAACA CTCCGCAAGG TAGTATCGCC ATCAATATGA CGGGCGGCAC TGCTCCTTAT
ACATACGCAA CCGGTGGGGT GAGCAATGGC AACAGTAACG TATTCAACAA CCTGCAGCCG
GGCATGTACA CGGTAAGGGT GGTGGATAAC GGCGGGTGTA CAATATCAAG GATCGTCGAG
GTAAAAAAAG ACGAAACAAA AGTACTGGAT GCGGAAGCAA CGGTTACGCC GCCAGATTGT
AGTGGCAGAG GCAGTATCAG CGTACAGATA AAAGAAGGCC CCCCGCCTTA CGAATATGCG
CTGGATGCCG GTGTTTATCA GCCTTCCCCG ACATTCAACG GTGTCGCTCC GGGTGACTAT
ATCGTACATG TAAGAAATGC ATCCTGTGTC GTAGATATTC CTGTTACGGT CGCCCAGGGA
TCTGTTATGC AGCTCTCCGT GAATAGTGTC GACGAATCCT GTAGTCAGGC TGATGGTCAG
ATTGCCGCTA CTGTTAGCGG TGGTACACCG CCTTATACTT ATACCTGGAA TAATACAGCT
GGTACCGGGA CATTGCGTAA TCTGTCAGCG GGTAATTATG CCCTGGTGGT AACGGACCAG
CATAATTGCC AGGTGGATAC GAGCATCACA TTGCAGAATA TTTCCGAGCC ACCAGTGGTG
ATCACCAATA ATGATACGAC AATCAATATC GGTCAGTCGG TACAATTGCA TGCGATCAAT
GCGGTGGATT ATGCCTGGAC GCCTGTCAGC GGACTTAGTT GCGCGGACTG CGCGAACCCT
GTCGCCACGC CCAGGGAAAC GACTACATAT ACTGTTACTA CCGTAACGGG CAGGAACTGT
GTAAAAACAG ACCTGGTAAC CATCAATATC ATTTTTAATA ATTCACTCTA TATTCCTACT
GCATTTACAC CTAATGGTGA TGGTGTCAAT GACCGCTTTG TCATCAAGTC GCACGGTATT
GCGCATTACA ATATCCGTAT TTTCAATCGC TGGGGGCAAC AGCTGTTTGC TTCCAATAAT
TTGTCAACTC ACTGGGATGG CCGTTTTGGA GAAGTGTTGC AGCCGGCAGG TTCTTATGTG
TATATTGTGA ATTATAGTTA TTTCGGACAT GAGAATGAGG ATATTACGGA GAAGGGTACT
TTGACGCTGA TCAGATAA
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| Protein sequence | MRSRLLPMLV LLHLIYCRIT AQVAGFTVPD TVCVNQTFNI QNNSTGGTTY FWNFCSGSLF
STPVVTHLTN INGALRTPTF LAIAEDAGNY YAFITNNIGE LVRYSFGNSY LNTPTADNFG
SLGGVIPNHT QGVQVIQDGN NWYVIIVGGT SEIAPRIVRI SFGNALSNAP VSSVNWGNLG
NMDYPHDLYI TRQGSNYYGF TVNFLSNSVT RFDFGNSVAN TPTAINLGNV GSLNHPTGIF
ATQDNGNWYV FVTNEGTNSI SRMDFGNSLA NTPTGVNLGD GGGIIDGPRD ISVIRDCGKI
FGLVVSAGAS DLTRIDFTGG ITSGFTATSL NSGGGFSFPH SISTIFREGN DLYAFVTNAT
GQKISRFVFN SCNTSSISNS TLQNPPPVSY TQAGTYTINL LMNESSPTQS TFCRTVVVLN
PPTVNLGPDQ AICEGATSVL DAGAGFSSYL WSTGETSQTI TVSDPGTYSV VVSNGGCTAT
DAVVVTRSQV LNMTATVTDV TCNTPQGSIA INMTGGTAPY TYATGGVSNG NSNVFNNLQP
GMYTVRVVDN GGCTISRIVE VKKDETKVLD AEATVTPPDC SGRGSISVQI KEGPPPYEYA
LDAGVYQPSP TFNGVAPGDY IVHVRNASCV VDIPVTVAQG SVMQLSVNSV DESCSQADGQ
IAATVSGGTP PYTYTWNNTA GTGTLRNLSA GNYALVVTDQ HNCQVDTSIT LQNISEPPVV
ITNNDTTINI GQSVQLHAIN AVDYAWTPVS GLSCADCANP VATPRETTTY TVTTVTGRNC
VKTDLVTINI IFNNSLYIPT AFTPNGDGVN DRFVIKSHGI AHYNIRIFNR WGQQLFASNN
LSTHWDGRFG EVLQPAGSYV YIVNYSYFGH ENEDITEKGT LTLIR
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