Gene Cpin_5225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5225 
Symbol 
ID8361402 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6604624 
End bp6605700 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content48% 
IMG OID644967373 
Productpeptidase M48 Ste24p 
Protein accessionYP_003124857 
Protein GI256424204 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.32225 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAAAG GAACCTTTTA CGATCACAAG GTGGCTGTTG CCATTCCTGC TACGATCCGG 
ATATTCGATG AAAGTTTGCA GTTTGAAACA CCGGTGGAGG GTATGCCTCC GCGCAGGCAT
CACTGGTTAT TTTCAGAGAT AAACGTCGAT ATGGCTGACA AGCGTTTTAT CCGTCTTGTC
AACCAGGCCG ATGATGCCGG TACACTGGAA GTAAATGACG CCGCTTTCGT AGATATGTTC
CTGGAAAAAT ACAAACGCGT ACGCAGTATC GGTCTGGATA GACTGGTACT GCGTAATGGC
GTTAAAGTGG GGCTGGCTGC CCTGCTGATC ATTCTCGGTC TGGCGGCACT GGCGCATTTT
GTAATTCTTC CCTGGTGTGC CGACAGGATC GTCGATCGCT TGCCCCGTTC CTTTGATAAA
GAATTAGGAG AAACGGCCAT GCAGAGCATG GATGAAAGCC GCGACGTAAA TGCCAGTGCC
TTACTCACCA GGTTTGGCGC GCAGATGCAC TGGGATTCCC CCGACTCCCT GAAATTTTTT
ATAGTACCCA GTAAGATCGA AAATGCGTAT GCGCTTCCCG GCGGCTACGT ATTTGTTTAT
ACGGGTCTGC TGAAGAAACT GAATAAAAAA GAAGAACTGG CCGCATTATT GTCACATGAA
GTGGCACACG TCAGCTGCCG TCACTCCGTA CGTAAGTTGT GCCGGGATAT GAGTTCTTCT
GTACTGTTAA CCCTCGTGCT GACAAACAGC AGTCAGGCTG CCAGCGTTTT TTATTCCAAC
GCCAACGCGC TTTATAACCT CACTTATTCC CGCCAGTATG AACAGCAGGC GGATATTGTC
GGCATGGAAA CCCTCCGTAA GAATCATATC GATCAGCATG GCATGGTAGA ACTGATGCAG
GTGCTGCAAC AATTGAGTGA AAAGGTGGAT GTGCCTGAGT TTATCAGCAC ACACCCGCTG
ACCAAAAACA GGATCAGTTA CGCGAAGGAA AACATCAGAA AGCATCCCGG AACGGTAGAT
CCGCATGAAC AGATGGACGT GATTTTTGGT CAGTTAAAAG CATTGTACAA AAAGTAA
 
Protein sequence
MFKGTFYDHK VAVAIPATIR IFDESLQFET PVEGMPPRRH HWLFSEINVD MADKRFIRLV 
NQADDAGTLE VNDAAFVDMF LEKYKRVRSI GLDRLVLRNG VKVGLAALLI ILGLAALAHF
VILPWCADRI VDRLPRSFDK ELGETAMQSM DESRDVNASA LLTRFGAQMH WDSPDSLKFF
IVPSKIENAY ALPGGYVFVY TGLLKKLNKK EELAALLSHE VAHVSCRHSV RKLCRDMSSS
VLLTLVLTNS SQAASVFYSN ANALYNLTYS RQYEQQADIV GMETLRKNHI DQHGMVELMQ
VLQQLSEKVD VPEFISTHPL TKNRISYAKE NIRKHPGTVD PHEQMDVIFG QLKALYKK