| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5203 |
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| Symbol | |
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| ID | 8361380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6577045 |
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| End bp | 6580059 |
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| Gene Length | 3015 bp |
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| Protein Length | 1004 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644967351 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003124835 |
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| Protein GI | 256424182 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00178942 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGC AGTTTCTTTT AATGGTAGCG GTATGGCTTT CGGCCGTTAG CCCTTCCATG
GCCAACGCGG CAGGTCATTT TGTATATGAT CAGGTAGCCC GTCAGGAACC TATCAAGGGA
GTGGTAGTCG GTTCCGATGG TGCGCCGATA CCAGGCGCTT CGATCAAATC GCTGGCCTCC
AACAAGGGTA CAACGACTAA CGAGCGCGGA GAATTTACCT TGCAGGGAGC TGCAGGCGAC
AAACTGGTGA TCACCTTCAT TGGTTACACC CAACAGGAAG TGGTAGCCAC CAGTACGCCA
ATGCGTATTA CCTTGTCAGG CAGCAACAGC CAGCTGGGCG AGGTAGTAGT AGTAGGTTAT
GGTAGCCAGA CCAAGGCTGA CGTAACCGGT GCACTGACCC AGCTGAAAGC AGACAATATC
AAACAGGGTG TAAACGTCTC TGTTGACAAC ATGCTCCAGG GTAAAGTATC TGGTGTGCGT
ATCGCACAGT CCAGCGGTGA ACCTGGTGCA GGTGTGGATG TATTCATCCG TGGTGTGGGT
TCTATCCGTA GTGGTAGTAC TCCGCTTTTC GTAGTGGATG GTATTCCATT GAGTAATGAT
AACGTGAGTG CAGGAGGTAC AGACTTCGGT CTGGGTTCTT CTGAACCTAA AAACCCGCTG
AACTTCCTGA ACACCAGCGA TATTGAAACC ATCACCGTTC TGAAAGACGC TTCTGCAGCG
GCTATCTACG GTGCAAGGGG TTCTAACGGT GTGGTACTGA TTACTACCAA ACGTGGTAGC
AGAGGAACTT CTACACTGAC TTACGATGCG TACCTCGGTA CTTCTAAAGT GATCAAAAAA
CTGGACGTAC TGAATGCTGA CGAATATCGT AAAGCGATCA AAGATCCGGC TTATGACCAC
AAAGGCAATA CTGACTGGCA GGATGTGATC TATCGCAATG CATTTGTACA GAACCATAAC
CTGTCTTTCG CTAAAACTAC CAACACCGGT AGCTATATGG CGTCTTTCTC CCGTATGGAC
CAGGATGGTA TCGTTGAAAC CAGCTCATTC AAAAGAACAA CTGCAAGACT GAATGCGGAA
GAATCTTTCT TCGACGACAG GCGCCTGGTT GTTAAGCTGA ACCTGACTGC AAGTGATATC
GACGAAACCG GTATCCCTAA CGGTAATACC GCAGGTTCTG ATGGTCAGCT GATCATTCAT
GCACTGATGG CTAACCCTAC CCGTTCAGTA TATGATTCTC TGGGTGGTTA TACCAACTTT
AACATGAACG CTCACTATAA CCCTGCTTAT CTGTTGAGCA TCTATAAAGA TAAAACTAAC
ACCTTCCGTG TACTGGGTAA CGTAGAAGCG TCCCTGAGAC TGTTCAAAGG TCTGAACTAT
CGTATTAACT ACGGCATCGA TAAGTCAACT TCTGAGCGTA ACTCTACCAT CTATCCGAAC
ATTACGGACA GAACGCCACT GGGAGCTTAT GCACAGAACA ACCTGCAGTC ACATACAACC
CTGCTGGATC AGTACCTGAC TTATAACCGT TCTATCGATA AACATTCATT CGAAGTATTG
GGTGGTTTCT CTTATCAGCA GTTTAAATTC GCTGGTACTG CTTTCGGTAT GATCAATATC
GCAAAACAGG GACAGGGTGT AGATCCTGAA TACAACCCGG GTTATTCCGG TACGCCAACC
ATTCCAAGTG GTTACGCACA GGAGAATGAA TTACAGTCTT ACTTCGGACG TGTAAACTAT
AATTACGATA ACCGTTACCT GGTAACAGCC TCCCTCCGTG CAGATGGTTC TACCCGTTTC
GGTGAAAGTA AAAAATATGG TTACTTCCCA TCCTTCGCAC TGGGCTGGAC CCTGTCTCAG
GAAGGTTTCA TGAAAGACAT CAGCGCTATT CAGAACTTAA AGCTGAGAGC TAGCTGGGGT
CAGACTGGTA ACCAGGAAGT ACCAAACAAA ATCACACAGG CAAGCTACTC TCTGGCTACT
TCAGCAGGTT ACTACCTGTA TGACGACCTG AAAGTGGTAA ATGGTGTACT GGTAAACCGT
ACTGCTAACC CGAACCTGAA ATGGGAAATG GTACAACAGT ATAACATCGG TGCTGACTTC
GACCTGTTCA AGGGTAAATT ATACGGTTCC GTGGAGTACT ATAACAAGAC TACCAAAGAT
CCTATCCTGA ACATCCCTTC TGGTCCGCTG AGCCCAACCA CTACCGTATG GAAAAACGTA
GACGCCAGCA TCGTGAACAA AGGATTCGAG TTCACCCTGG GAACTACCCT GATCCGTACA
AAAGATTTCA GCTGGTCACT GGATGTGAAC GGTGCTACTA TCTCTAACGT GATCAAAGAT
CTGCCGGTTT CTGAACTTTA CTCGGGTAGC ATTTCCGGTC CTGGTCTGTC TGGTGTAAAC
GCTAACATCT ACAAGAATGG CTACGAAGCG GGTTCATTCT TCATGCTGAA ACACCTGGGT
TATGACAAGG ATGGTAAAGA TATCTTTGAA GACAAAAACG ACGACGGCGT AATCAACGCT
GCTGACAGAC AGATCTTCGA AGGTGCTATT CCTAATTTCA ACTTTGGTCT GAATAGCCAG
ATGCGTTACA AAAAGTTCGA CCTGTCATTT GCGGTGATCG GACAGACAGG CGGTTACCTG
GTTAACAACA CTGCACTGGA TCTGAACATC AACAGCCTTG CTTCTGACCG TAATGTACTG
AGAAAGTTCT ATGAAGCAAA CGCAAACCCT GCAAATGCGG TACAGCTGTC TACTTTATAT
CTGGAGAAAT CTGACTTCGT TCGTTTAAGC AACCTGCGTC TCGGATACAC TTTACCGCTT
GAGCGCGTAC AGTGGCTGAA ATCCGTTAAC GTATATGTAA GTGCTTCTAA CCTGCTGACC
ATCACTGGTT ACTCTGGTTA CGATCCGCTG GTAAACACTA CCAAAACAGT TGGTGGTAAC
CAGTCTCTGG GTATAGATTA CACTACTTAT CCGGCTGCAA AAACATTCCT CTTCGGCGCA
ACAGTTAAAT TTTAA
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| Protein sequence | MNKQFLLMVA VWLSAVSPSM ANAAGHFVYD QVARQEPIKG VVVGSDGAPI PGASIKSLAS
NKGTTTNERG EFTLQGAAGD KLVITFIGYT QQEVVATSTP MRITLSGSNS QLGEVVVVGY
GSQTKADVTG ALTQLKADNI KQGVNVSVDN MLQGKVSGVR IAQSSGEPGA GVDVFIRGVG
SIRSGSTPLF VVDGIPLSND NVSAGGTDFG LGSSEPKNPL NFLNTSDIET ITVLKDASAA
AIYGARGSNG VVLITTKRGS RGTSTLTYDA YLGTSKVIKK LDVLNADEYR KAIKDPAYDH
KGNTDWQDVI YRNAFVQNHN LSFAKTTNTG SYMASFSRMD QDGIVETSSF KRTTARLNAE
ESFFDDRRLV VKLNLTASDI DETGIPNGNT AGSDGQLIIH ALMANPTRSV YDSLGGYTNF
NMNAHYNPAY LLSIYKDKTN TFRVLGNVEA SLRLFKGLNY RINYGIDKST SERNSTIYPN
ITDRTPLGAY AQNNLQSHTT LLDQYLTYNR SIDKHSFEVL GGFSYQQFKF AGTAFGMINI
AKQGQGVDPE YNPGYSGTPT IPSGYAQENE LQSYFGRVNY NYDNRYLVTA SLRADGSTRF
GESKKYGYFP SFALGWTLSQ EGFMKDISAI QNLKLRASWG QTGNQEVPNK ITQASYSLAT
SAGYYLYDDL KVVNGVLVNR TANPNLKWEM VQQYNIGADF DLFKGKLYGS VEYYNKTTKD
PILNIPSGPL SPTTTVWKNV DASIVNKGFE FTLGTTLIRT KDFSWSLDVN GATISNVIKD
LPVSELYSGS ISGPGLSGVN ANIYKNGYEA GSFFMLKHLG YDKDGKDIFE DKNDDGVINA
ADRQIFEGAI PNFNFGLNSQ MRYKKFDLSF AVIGQTGGYL VNNTALDLNI NSLASDRNVL
RKFYEANANP ANAVQLSTLY LEKSDFVRLS NLRLGYTLPL ERVQWLKSVN VYVSASNLLT
ITGYSGYDPL VNTTKTVGGN QSLGIDYTTY PAAKTFLFGA TVKF
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