| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5181 |
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| Symbol | |
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| ID | 8361358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6463981 |
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| End bp | 6465414 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644967329 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003124813 |
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| Protein GI | 256424160 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0808322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00908583 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTAAAG GAAAAAGATA CAGATATATC GTAGGAGGCT GCATTGCGCT GGGTTTCACC
GCGTGCAGCA TTCCTAACGC CGTTGAAAAA ACAGAGAATA AAAACACGCC TGCCAGTTAT
AATACATCTT CAGATACAGC CAATATCGCC GGCATCAAAT GGAAGGAATA CTTCACGGAT
CCTTATCTGG CAGCGCTGAT TGATACCGCA TTACAACATA ACCAGGAGTT GAATATCACG
CTCCAGGAGA TTGAGATCAG CCGGAATGAG ATCAAAGCCA GAAAAGGGGA ATACCTGCCA
TTTGTAGGCA TTAAAGGGGC GGCTGACGTA GAAAAAGTAG GCCGTTATAC CAGTCAGGGT
GCAGGTGACG CCACGACGGA GATCAAACCA GGAAAAGAAA TGCCGGATCC TCTGCCCAAT
TACCTGGTAG CGGCATACGC CACCTGGGAG ATTGACATCT GGCACAAGCT GCATAATGCC
ACCAAAGCGG CTGTTTCCCG GTACCTGGCA TCCGTTGAAG GCAGGAACTT CATGGTGACA
GGTCTGATCG CAGAAATCGC TAATTCTTAC TACGAATTGC TGGCGCTGGA TAACCAGCTG
ACGATCGTAA AACAGAATAT CGAGATCCAG AATAATGCGC TGGAAATCGT AAAGGTGCAG
AAAGAAGCCA CCAGGGTCAC CGAACTGGCC GTGCGCAAAT TCGAAGCAGA AGTACTGAAG
ACGAGAAGTT TACAGTATGA TATCCAGCAG CAGATCACGG AAACTGAGAA CAGGATTAAT
TTTCTACTGG GCCGTTATCC GCAGCCGATT GCCAGGAATG ATGAAGCCTT TGGCAAATCA
CTTCCGGCAA CGATACACGC AGGTATGCCT TCCCAGCTGC TGGCCAATCG TCCGGATATC
AAACAGGCGG AACTGGAACT GACAGCTGCC AGACTGGATA TCAAAGTAGC GAAGGCGCAA
TTCTATCCTT CCCTGGGTAT TTCAGCGGCA CTGGGTTATG AGGCATTTAA TCCTGCATAC
CTGCTTAAAA CGCCTAAATC CCTGCTGTAT TCCATCGGAG GTGATCTGAT AGCACCACTG
GTGAATAAGA ACGCTATAAA GTCCGCTTAT GCCAGCGCAA ACGCCAAACA GATACAGGCA
GTATATAACT ACGAAAGAAG TATCCTGAAT GCATATGTTG AAGTGGCCAA TCAGTTGTCT
AAGATGCAGA ACCTGCAAAA GAGCTATGAC CTGAAGTCAC AACAGGTAGC TGCTTTGTCA
CAAGGCATCA ATATTTCAAA TGATCTATTC AAATCAGCGA GAGCTGACTA TATGGAAGTA
TTGCTGACCC AGCGCGATGC ATTAGAGTCC AGGTTTGAAC TGATAGAAAC ACAGAAAGCG
CAGATGAATG CACTGGTGGA TATTTATCAG GCACTGGGAG GTGGTTGGAA TTAA
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| Protein sequence | MFKGKRYRYI VGGCIALGFT ACSIPNAVEK TENKNTPASY NTSSDTANIA GIKWKEYFTD
PYLAALIDTA LQHNQELNIT LQEIEISRNE IKARKGEYLP FVGIKGAADV EKVGRYTSQG
AGDATTEIKP GKEMPDPLPN YLVAAYATWE IDIWHKLHNA TKAAVSRYLA SVEGRNFMVT
GLIAEIANSY YELLALDNQL TIVKQNIEIQ NNALEIVKVQ KEATRVTELA VRKFEAEVLK
TRSLQYDIQQ QITETENRIN FLLGRYPQPI ARNDEAFGKS LPATIHAGMP SQLLANRPDI
KQAELELTAA RLDIKVAKAQ FYPSLGISAA LGYEAFNPAY LLKTPKSLLY SIGGDLIAPL
VNKNAIKSAY ASANAKQIQA VYNYERSILN AYVEVANQLS KMQNLQKSYD LKSQQVAALS
QGINISNDLF KSARADYMEV LLTQRDALES RFELIETQKA QMNALVDIYQ ALGGGWN
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