Gene Cpin_5170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5170 
Symbol 
ID8361347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand+ 
Start bp6450341 
End bp6451090 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content45% 
IMG OID644967318 
Producthypothetical protein 
Protein accessionYP_003124802 
Protein GI256424149 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0991065 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0103355 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACTCA TTCCAACAGA TCATACGGAA TTTTTTCACT GGTTTAAGAA ACATACAGAA 
ACATACTGGA ACAAGGACAG AGATGCGTCA CCTGAAGAAA AATTATGTCC GGAATGGATA 
CAGGGCGCTA AATGGATCGG CATGACGGAT GAACAGATAG ACCAGGTACA GGAAAAATAC 
GCCGTAGTCT TTACACCGGA ACACAGGGCA TTTCTGAAGA TCTTACACAC TATCGACCGC 
AAGGAAAGAG TATACAACGC AGGCGGCGAT TACTACGAGC AGCCCTTCCT GTTTAACTGG 
CTGGAAGATG AAGAAGCCAT CCGCCTAAAA CTAAACTTCC CTTATAACAC CATACTGGAT 
GATGTATTAC GTATGGGCTT CTGGCATAAC AGGACCTGGG GAGAAAGACC CGATAGCGAC 
GAAGACAGAA CTACCGTATT CACCGAACTA TATAACACAG CCCCTAAAGT CATTCCCTTA 
ACCGGACACC GTTACCTCGT GGCAGATGCT ACCCTGGAAA GAAAACCGGT ATTGTCCGTA 
TGGGGAGCAG ATATCGTCTG TTATGGCCTC GACCTCAGAA AATACCTGCT ACACGAATTT 
AACGAACACC TTGACATACG TCATCGCAGA TACGATGTAG AAAATGAACA GTGGGAATGG 
GTATTGAACG AAGAATATAA ACCCAGTTTC CTGTATGAAG ACCAGTCGGA TGTAAGAAAA 
GTGAAGTTCT GGGGCGATTT TGTGATGTAA
 
Protein sequence
MQLIPTDHTE FFHWFKKHTE TYWNKDRDAS PEEKLCPEWI QGAKWIGMTD EQIDQVQEKY 
AVVFTPEHRA FLKILHTIDR KERVYNAGGD YYEQPFLFNW LEDEEAIRLK LNFPYNTILD 
DVLRMGFWHN RTWGERPDSD EDRTTVFTEL YNTAPKVIPL TGHRYLVADA TLERKPVLSV 
WGADIVCYGL DLRKYLLHEF NEHLDIRHRR YDVENEQWEW VLNEEYKPSF LYEDQSDVRK 
VKFWGDFVM