| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5149 |
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| Symbol | |
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| ID | 8361326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6428214 |
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| End bp | 6428801 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644967298 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003124782 |
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| Protein GI | 256424129 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0908146 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00524737 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCCAGGTG TGTCACCATA TGAGGAGGAT GAGTTACTTG CAGCTATAGC AGCCAATGAT
ACCGCTGCCT ATTCCCATTT GTATGATGTT TATTATAACA CCCTGGTATA TTTTTCCCTC
AGCATTATCC AGGATCAGCA TCAGGCAGAG GACATCGCTA CAGAGTCACT GCTTAAGTTA
TGGCAATCTC CTAACCGATT TGAGTCAATC GGGAAATTGA GAGCATATTT GTTTACACTG
GCGAGGAATG CCAGTCTTAA TTATCTGAAA CACCTCCGTG TACGGGAAAA GCGTTCCCTG
GAAATTTCGG AACAGGAACA AGGTGACGAC AACAGCATCG CTTCGCTGAT GGCGGAATCC
GAGTTAATGC GCCTGATTTA CCAGGAAATT GCCAGGCTAC CGGACAATTA CCGGGAGATC
GTAGAATTAT TATATCTACA GGATATGCCG TCGGCAGATG TAGCTGCCCG GCTGGACATT
TCAATGGAAA ACCTGCGGCA ACGTAAAGCC AGGGCCATAA AAGAGTTAAA AACAGTACTC
CTTAAGAAAG GGGTGAGTAG CCAATTTCTA TCAATTTTAT TTTTTTGA
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| Protein sequence | MPGVSPYEED ELLAAIAAND TAAYSHLYDV YYNTLVYFSL SIIQDQHQAE DIATESLLKL
WQSPNRFESI GKLRAYLFTL ARNASLNYLK HLRVREKRSL EISEQEQGDD NSIASLMAES
ELMRLIYQEI ARLPDNYREI VELLYLQDMP SADVAARLDI SMENLRQRKA RAIKELKTVL
LKKGVSSQFL SILFF
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