Gene Cpin_5148 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5148 
Symbol 
ID8361325 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6426919 
End bp6428160 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content47% 
IMG OID644967297 
Productanti-FecI sigma factor, FecR 
Protein accessionYP_003124781 
Protein GI256424128 
COG category[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG3712] Fe2+-dicitrate sensor, membrane component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.114166 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.012377 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAACAG ACGACTTTAC ATCGATGGAA CATGCTTTTG ACGAGAGGAT TGTACGTCTG 
CTACATCAGC AGCTTACGGG AGAGGTATTG ACTACCGAAG AACAACAGGA GCTGGATACC
TGGAAAAATA CGTCTTTGTC TAACACCGCC TTATACGAGA AAATAAATGA TGAAGCCGCG
GTACAGCAGA TGCTGCAGAC CTGGCATCAG ATTGAACGTA ACCGGGAACA GAACAAAATA
CGCTTTCTCG CCATGCTGCA ACAATTGCAG CCGTCATCTA TCAGCAAACG TCCTTTGCTG
CGTTTTCTCA ACAATCAGGT ATTCCGCTAT GCAGCTGCTG TTGTATTGCT CATAGGCGTG
GTTACTTTCT TCTGGTTCAA TCAGCATAAA CCCCTTGAAC CAGGTAATAA AGTAGTGTCC
GTTGATAAAA ATATGCCTAT AGCACCCGGT CGGGACGGGG CCATACTTAC GCTGGCGGAT
GGTTCTACCA TGGTGCTGGA TAGTACCGGC AACGGTGTGG TCGCTGACCA GAACGGCACC
AGCGTTGTGC TGCAAAACGG ACAACTGGCC TATAATACGG GTAACGGGGC ATCCGGCGTG
GCAGTATATA ATACGGTAAG CACTCCCAAG GGCAGACAGT TCAAGCTGAT ATTGCCTGAT
GGTACTAAAG TCTGGCTGAA CGCTGCCAGC GTTATCAGAT ATCCGACCTC TTTTGAAGGA
AACGAACGTA ATATATCCTT ACAGGGGGAA GCCTATTTTG AGGTAGCCCG GAATGCCAAA
ACACCATTTA AAGTAACTAC AGGCGAAGCC ACCACCATAG AAGTGCTGGG AACCAGCTTT
AATATTAATG CATACACCAA CGAAAATACC ATACGGACCA CCCTCCTTGA TGGAGCCGTA
AGAATTAATG CCTATCACCA GACAGCTACG CTTAAACCGG GACAACAAGC GGCTGTTAAA
CCATCCAAAG GACAACTGGT GGTACTGAAT GCAGTAAATA CAGATCAGGT AATGGCCTGG
AAAAATGGGC TGTTCAATTT TGATGATGCC AGCCTCGACG AAGTAATGCG TCAGCTGGAG
CGCTGGTACG ACATAGAAGT GGTTTATGAA AAGGGAATAC CAACCGCGCA TTTTGGCGGT
GAGATTAACA AACAGAACAC ATTACAAGAT GTATTACATA TCCTGGAAGG GTCCAAAGTA
GACTTTCAGC TGGAAGGCCG TAAACTGATT GTAAAGCCAT AA
 
Protein sequence
MPTDDFTSME HAFDERIVRL LHQQLTGEVL TTEEQQELDT WKNTSLSNTA LYEKINDEAA 
VQQMLQTWHQ IERNREQNKI RFLAMLQQLQ PSSISKRPLL RFLNNQVFRY AAAVVLLIGV
VTFFWFNQHK PLEPGNKVVS VDKNMPIAPG RDGAILTLAD GSTMVLDSTG NGVVADQNGT
SVVLQNGQLA YNTGNGASGV AVYNTVSTPK GRQFKLILPD GTKVWLNAAS VIRYPTSFEG
NERNISLQGE AYFEVARNAK TPFKVTTGEA TTIEVLGTSF NINAYTNENT IRTTLLDGAV
RINAYHQTAT LKPGQQAAVK PSKGQLVVLN AVNTDQVMAW KNGLFNFDDA SLDEVMRQLE
RWYDIEVVYE KGIPTAHFGG EINKQNTLQD VLHILEGSKV DFQLEGRKLI VKP