| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5130 |
|---|
| Symbol | |
|---|
| ID | 8361307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6403817 |
|---|
| End bp | 6404560 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644967279 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003124763 |
|---|
| Protein GI | 256424110 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.170214 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.189904 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTAG CAAACAAAAA CGTAGTGATA ACCGGTGGTA GTACGGGTAT TGGATTAGCC
ACCGCAAAAC AGTTTATTAA AGAGGGGGCA AATGTTTTGA TCACCGGTAG AAGCGCAGGC
AACCTGCAAA AGGCGGCTAA TGAGATTGGT AGTCCGAACC TGAAAACGGT GATAGCTGAC
ACCTCAAATT TTGAAGGAAT CGAAGCCCTG AAAAAAGCAG TTGCTGAAAG CGGTCAAAAA
GTTGATGTTC TTTTCCTAAA TGCCGGTGTC GCTTCGTTTG CACCAATCGC GCATGTCAGC
GAAGCCGATT TCGATACCCA ATTCAATACA AATGTTAAGG GGCATTTTTT TACACTGCAA
AAGCTGATCC CACATTTAGC GGATGGTTCG TCCGTCACTT TCACCTCTTC TGGTGTGGCA
ACTAGCGCTG CTGTAGCTAC TGCTGTGTAT TCCGCTACAA AGGCTGCATT GAATAAGATC
GCAGACATAG CAGTAAATGA ACTGGCAGAG AGAAAGATTC GTGTCAATAT CGTCAGTCCG
GGCCCGATAA AGACACCCGG ACTGGATTCC GTAGCGCCTC CCGAAGCACA GGCTTACCTT
GCAGCAAGTA CCGCGCTTCA GCGTGTAGGT ACGGTAGATG AGATCGCAGG TGCTGTTGTG
TTCCTTGCCT CAGATGCGGC GGGATATATC AACGGAGCCG ATATCGCAAT TGACGGTGGT
TTCATACAAT ACCATTTGAA ATAA
|
|---|
| Protein sequence | MSLANKNVVI TGGSTGIGLA TAKQFIKEGA NVLITGRSAG NLQKAANEIG SPNLKTVIAD
TSNFEGIEAL KKAVAESGQK VDVLFLNAGV ASFAPIAHVS EADFDTQFNT NVKGHFFTLQ
KLIPHLADGS SVTFTSSGVA TSAAVATAVY SATKAALNKI ADIAVNELAE RKIRVNIVSP
GPIKTPGLDS VAPPEAQAYL AASTALQRVG TVDEIAGAVV FLASDAAGYI NGADIAIDGG
FIQYHLK
|
|---|
| |