| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5113 |
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| Symbol | |
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| ID | 8361289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6377512 |
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| End bp | 6380820 |
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| Gene Length | 3309 bp |
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| Protein Length | 1102 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644967261 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003124746 |
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| Protein GI | 256424093 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.298267 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.131345 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAACA TTGTACCTGG CAAAGGTATG CCAATTCCTT TTTCCAAATT ATTTATGATT
ATGAAGCTAA TCATTCCGTT GATGCTCGTG GCAGTGTTAC ATGTAAGCGG CGCCAGTTAT
GGCCAGAAGG TCACGATCAA CAAAAAGAAG GCGGCATTAA CTGATATTTT CAAGGCTATC
AGTGAACAGA CAGGACGTGA GTTTATCGCG AATCCTAATC TACTGGCAAA TACCTTTCCG
GTAGATGTCA ATGTAAAAAA TAAAGAGATC AGCGAGTTTC TGCCGGAACT GCTGAATAAG
CAGGGATTGG CTTATTCAGT AGTCAATAAT GTTATCGTCA TTACCAGAGA CCCAAAGCTG
CTGCACGGCC TTGCCAACTC ATTAATCATG GGCACAGAAC CGCCCAAGGT CATCAAAGGC
TGGGTAACGG ATATGACAGG CGTACGGTTG CCGGGAGCAA CAGTGTCATT GAAGGGCACG
AATAAAGGAG CTACTACTGA TGCCAATGGT TATTTCGAAA TACGCAGTGA GCTGGCGGGT
GACAGTGCTG AAGTAGTTGT CTCTTATACA GGCTTCATCA CGAAAGTGGC ACGTATCAAA
CACGCCATGC CAACATTAAT ATATCTCAGA GCTTCTACCA GTGAACTGGA CCAGGTACAG
GTGATCGCTT ACGGTACTAC GACCAAGCGT TTCAGTACCG GAAACGTTGC CACAGTTACG
GCAGCGGAGA TTGAAAGAAG TCCTGTCAGC AATCCCTTGC TAGCATTAGC TGGAAGAGTT
TCCGGATTGG TGATCAATCA GGTGAATGGC TTGCCAGGTG GCGCCGTCAA TGTACAGTTA
AGAGGGTTCA ACTCCATCTC CGGTAGCTCA GCTCCTCTAT ATATCATTGA TGGTGTGCCG
TTCAAGGGCG GTGGTTATAG TTCAATCAAC TTTGCATTAG ACGGCGGTAA CCTGCTGGAT
TTTGTGAACC CTGCAGATAT CGCCAGTGTG GACGTACTGA AAGATGCAGA TGCGACTTCC
ATTTATGGTT CACGCGGCGC CAACGGCGTT ATCCTGATCA CTACGAAAAA AGGGAAACCC
GGCCGTATGC GTTCTAATGT AACAGCCTAT ACCGGTATCA GTAAAGTAAC CCGTAAGCCT
GAGTATATGA ACCTGCAGGA ATATCTGCAG ATGCGCAGAG AAGCGATGGC GAATGATGGC
GTGCGTCCTG GTCCGGCGGA CTACGACGTA AACGGCACCT GGGACACTAC AAAATACACT
GACTGGCAGC AGCGCATTAT GGGTGGCAAC GCACATGTCT CTGATGTACA GGGAAGCGTA
TCCGGCGGTA ATAACCAGGT ACAATACCTT GTTGGCGGCG GTTATCACAG GGAAAGTCCG
GTAATGCCAA CTGACGGATC TTCCAGAAAA GGTTCCGCAC ATTTTAATAT CACCGGTACC
AGTGAGGATA ATAAATTCAG CGTGAATGCA GGCGGTTATT ATGTATCTAA TAACAACGAC
ATCCCTCCCA TCGATCCGAC AGGATCCGTA AGAGACCTGC CGCCGAACGC ACCGGAACCA
TTCAATCACG ACGGTACGCT TAACTGGGAG AACGGCACTT TTGGTAATCC GTACTCTTCG
CTACTGCAAC CTTATCTGGG ACGCAGTAAC AACATCAACG GTAACATTAC ACTGAGCTAC
AGACCGATCA AAGGACTGGA CATTAAGGTA GCTGGTGGTT ATCAGAATAC CGCGATCAAA
GAATATACAG GTACGCCATT ATACATTATC AATCCTTACC TGACAGGCAA CAAGATTGCT
TCCGCCCGTT ATGGCACCAG CAATTACAAT ATCTGGAACA TCGAACCACA GGTTACCTAT
AATTTCCGCT TTGGAAAAGG GAATGTTGAA ACTTTGTTAG GGGAAACATT CAGACACGAA
CTGAATGAAT CATTGATACA GAGCGGTAGT AATTATGTGA GTGATGCATT GTTGAAAAAT
CCTGCAGCAG CGGCCACGCT AATCAATGAA AGCAGCGGGA TGTCAGAGAA TGCTTACAAC
GCTACATTCG GCAGGGTGAA ATATACCTGG GACAGCAAAT ATATCCTGAC TTTAAATGGC
CGTTATGATG GTTCCAGCCG TTTTGGTCCG GCAAACAGGT TCCACTTCTT CTGGTCGGCC
GGTGGTGCAT GGATATTCAC CCAGGAGAAA GCAGTAAAAG CACTCGTGCC ATTCCTGAGC
TTTGGTAAAC TGAGAGGTAG TTATGGTACG ACGGGTAATG ATGCTGCGGG CGATTATGCG
TTCCTTGACC TGTATCGTTC TATTCCTTAC CCATATCAGG GTTCCAATGG TTTACAACCA
CAGGCGCTGT TTAATGCCGC ATTACAGTGG GAAGCGACCC GTAAGATAGA AGGAGCTATT
GACCTGGGTT TCCTTGAAGA CAAGATCCTT GTGACGGCCA GCTATTATAC CAACCGTAGT
AACAACCAGT TACAGAATCT GCCATTATCC GCAGTCACCG GATTTAGTTC TATCAGAAGT
AATATCCCGG CTATTATCCG TAACAACGGA TGGGAATTTG AATTGCGCAC CACGAATATC
AAAAGCAAAG ATTTTGACTG GAGTACTTCC CTGAATATCG CGTTGCCACG TAATACACTG
GTATCTTATC CGGGCGTAGG ACCAGATGAT CCAACCTTCA TCATCGGTAA GCCACTGGGT
ACGATCAGGG TATATGAATA TGCAGGCGTA GATCCCCAGA CAGGCGTATA CACTTTCTAT
GATAAAGAGC GTAAGAAAGT AACGTCACCG GTAGACAGAA CAAAGATCTT AGACGCGGTA
AGCGTTAAAT ACTATGGCGG ATTTCAGAAC AGCCTGCGTT ATAAAGGCTG GACAGCAGAT
TTCCTGTTAC AGTTTGAGGA CCATACTGTC AGGAATCCAT TGATCAATGG TACGTTCCCT
CCCGGTTTCC AGGGTAATCA GCTGAAGAGC CGTGCACTGG GCCGCTGGCA GCAACCAGGC
GATGTCACTG ATATCCCGAA ATACACACAG AGCATTCTCG GATTCCTGCC ATGGGCTTTA
TATGCAAAGA ACAGTGACCT GGCTTATTCC AGAGCGCCTT TCCTCCGCCT GAAGAATGTT
TCTATTGCTT ATCAGCTGCC AGCTTCTCTG ATGAAGAAAC TGCGGCTGCA ACAGGTATCT
GTCTTTGCAC AGGGACAGAA CCTGCTGACA TTCTCCAAAA AAGAATTCCG TGACTTCGAT
CCGGAAGCTG ATGCGATCAA TTTCGGACCA TTGAAAACAT TCACCGGCGG TCTTAAAGTA
AATCTCTAA
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| Protein sequence | MNNIVPGKGM PIPFSKLFMI MKLIIPLMLV AVLHVSGASY GQKVTINKKK AALTDIFKAI
SEQTGREFIA NPNLLANTFP VDVNVKNKEI SEFLPELLNK QGLAYSVVNN VIVITRDPKL
LHGLANSLIM GTEPPKVIKG WVTDMTGVRL PGATVSLKGT NKGATTDANG YFEIRSELAG
DSAEVVVSYT GFITKVARIK HAMPTLIYLR ASTSELDQVQ VIAYGTTTKR FSTGNVATVT
AAEIERSPVS NPLLALAGRV SGLVINQVNG LPGGAVNVQL RGFNSISGSS APLYIIDGVP
FKGGGYSSIN FALDGGNLLD FVNPADIASV DVLKDADATS IYGSRGANGV ILITTKKGKP
GRMRSNVTAY TGISKVTRKP EYMNLQEYLQ MRREAMANDG VRPGPADYDV NGTWDTTKYT
DWQQRIMGGN AHVSDVQGSV SGGNNQVQYL VGGGYHRESP VMPTDGSSRK GSAHFNITGT
SEDNKFSVNA GGYYVSNNND IPPIDPTGSV RDLPPNAPEP FNHDGTLNWE NGTFGNPYSS
LLQPYLGRSN NINGNITLSY RPIKGLDIKV AGGYQNTAIK EYTGTPLYII NPYLTGNKIA
SARYGTSNYN IWNIEPQVTY NFRFGKGNVE TLLGETFRHE LNESLIQSGS NYVSDALLKN
PAAAATLINE SSGMSENAYN ATFGRVKYTW DSKYILTLNG RYDGSSRFGP ANRFHFFWSA
GGAWIFTQEK AVKALVPFLS FGKLRGSYGT TGNDAAGDYA FLDLYRSIPY PYQGSNGLQP
QALFNAALQW EATRKIEGAI DLGFLEDKIL VTASYYTNRS NNQLQNLPLS AVTGFSSIRS
NIPAIIRNNG WEFELRTTNI KSKDFDWSTS LNIALPRNTL VSYPGVGPDD PTFIIGKPLG
TIRVYEYAGV DPQTGVYTFY DKERKKVTSP VDRTKILDAV SVKYYGGFQN SLRYKGWTAD
FLLQFEDHTV RNPLINGTFP PGFQGNQLKS RALGRWQQPG DVTDIPKYTQ SILGFLPWAL
YAKNSDLAYS RAPFLRLKNV SIAYQLPASL MKKLRLQQVS VFAQGQNLLT FSKKEFRDFD
PEADAINFGP LKTFTGGLKV NL
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