| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5089 |
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| Symbol | |
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| ID | 8361265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6335494 |
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| End bp | 6337353 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644967237 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_003124722 |
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| Protein GI | 256424069 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000712833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.235138 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTACAGA CGAGAAGATT GTTATTGACC GCTATCCTGG CATTCACTAC TGTTTCGTTA
TCACTGGCAC AACTGCCTAA GCTGGAAAGG ATAGAACCCG CTTTCTGGTG GACGGGTATG
CAGGAACCAT TCCTGCAACT GATCATCCAT GGAGATAAGA TCGCTGAAAA GGAAGTTTCC
CTCAGTTATC CGGGTATTAC CCTGCAGGAA GTACATAAAG TAGAGAATCC CAATTATTTG
TTCGTCGATC TTAATATCAC TTCTTCGGCT GTTGCCGGAT CTTTCCCCAT TAAGTTTAAG
CAGAAAGGAC AGAAAGACAT TGTATATACC TATGAGCTAA AGAAAAGAGA GGGCGGTATC
AAAGCGCAGG GCGTCAACAG CAGCGACTTT GTATACCTGA TCATGCCGGA TCGATTTGCA
AATGGCGATA AGAACAATGA TGTTATCAAA GGAATGCAGG AAACCTCATT GAACAGAGAT
TCCATGTATA AACGCCATGG TGGCGACATA CAAGGTATCA TTGATCACCT GGGATATCTG
CAGCAGATGG GGGTAACAGC CTTGTGGATG ACGCCGTTGG TGACCAACGA CCAGCCTTCT
GCTTCTTATC ATGGTTATGC CGCAACGGAA AACTACCGTA TTGATCCCCG CTTTGGTTCC
AATGAACTGT ATAAGGTGCT GGCTGATAGT CTGCATAAAA GAGGCATGAA ACTGGTTCAG
GATCTGGTAC ACAATCATAT TGGCAGTCAG CATTGGACAA TGAAAGATCT GCCTATGAAA
AACTGGGTAC ACCAATGGCC TGCCTTTACC CGTTCCAGCT TCCGCGCAGC TCCTTTAATG
GATCCATACG CGGCGCCCTC TGATCAGAAG ATCATGACCG ATGGCTGGTT CGATCTGCAC
ATGCCTGATA TGGACCAGAA AAATCCATAT GTACGCAGGT ATTTTACACA AAGTCATATC
TGGTGGATTG AATACGCCGG GGTAGATGCC TTTCGTCTTG ATACTTACCC TTATAACGAT
GCAGACTTCA TGTCGGAGTG GGGCAAAGCT ATTAAAGCGG CCTATCCCGG TTTTACTTTC
TTTGGAGAAG TATGGGTACA CAGCGGTCCT GAACAGGTCT TCTTTACACA GGGCAATACC
GTGAACAGAG GCTTTGATAC AAACCTCCCG GGTACTACAG ATTTCCAGAG TCTCTGGGCT
ATCTCGGCTG CCCTTAATGA AAAACCAGGA TGGGATGATG GTGTCGTAAA ACTTTATGCG
ACGCTGATAC AGGATTATCA GTATCAGGAT CCTATGCGTA ATGTGGTATT CCTTGACAAT
CACGACCTGA GCCGTTTCTA TTCAGTAGTA AAGGAAAATA AGAACAAGTA TAAAGCCGCC
CTCGCCTGGT TACTCACTAC TCGTGGTATC CCGCAACTGT ACTATGGCGC AGAGATTGGT
ATGAAGAACT TCAGCGCGCC CGACGGACTG GTACGTGAAG ACTTCAAAGG TGGATGGACT
GGCGATACAC AGAATAAATT TACTGCCGGT GGCCGTAATG CAGAAGAAAA TGAGCTGTTC
AACTATGTCA GCACAATAGC CAATTACAGA AAGAATAACC CGGTGTTACA AACGGGTAAA
CTGATGCAGT ATGTACCACA GGATAATATC TATACTTATT TCCGCTACAA CGGAGATAAG
ACTGTGATGA TCGTACTCAA TCCGAACGAA AAGGAAGCAG CTGTATCGCC CGCCCGTTTT
ACGGAAAGAG TGAGCGGCTT CACACAGGCC AGGGATATCG TCAGTGGTAA AACCTACCCG
CTTGCCGACA GTCTGCGCAT ACCAGCAGAA ACGACGCAGG TAATGGAATT GCTCAAGTAA
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| Protein sequence | MLQTRRLLLT AILAFTTVSL SLAQLPKLER IEPAFWWTGM QEPFLQLIIH GDKIAEKEVS
LSYPGITLQE VHKVENPNYL FVDLNITSSA VAGSFPIKFK QKGQKDIVYT YELKKREGGI
KAQGVNSSDF VYLIMPDRFA NGDKNNDVIK GMQETSLNRD SMYKRHGGDI QGIIDHLGYL
QQMGVTALWM TPLVTNDQPS ASYHGYAATE NYRIDPRFGS NELYKVLADS LHKRGMKLVQ
DLVHNHIGSQ HWTMKDLPMK NWVHQWPAFT RSSFRAAPLM DPYAAPSDQK IMTDGWFDLH
MPDMDQKNPY VRRYFTQSHI WWIEYAGVDA FRLDTYPYND ADFMSEWGKA IKAAYPGFTF
FGEVWVHSGP EQVFFTQGNT VNRGFDTNLP GTTDFQSLWA ISAALNEKPG WDDGVVKLYA
TLIQDYQYQD PMRNVVFLDN HDLSRFYSVV KENKNKYKAA LAWLLTTRGI PQLYYGAEIG
MKNFSAPDGL VREDFKGGWT GDTQNKFTAG GRNAEENELF NYVSTIANYR KNNPVLQTGK
LMQYVPQDNI YTYFRYNGDK TVMIVLNPNE KEAAVSPARF TERVSGFTQA RDIVSGKTYP
LADSLRIPAE TTQVMELLK
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