Gene Cpin_5086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5086 
Symbol 
ID8361262 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6331050 
End bp6332423 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content49% 
IMG OID644967234 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_003124719 
Protein GI256424066 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2211] Na+/melibiose symporter and related transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0501179 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.911731 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGGAA TGGCTAAGCC GCGGTTGTCC GCTGCGCGCA TATGGAACAT GAGCATGGGC 
TTTTTCGGTA TCCAGTTTGG TTTTGCTTTA CAAAATGGAA ATGCCTCCCG TATTTTGCAA
ACCTATGGAG CGGAAGTAGA GCACCTGTCC CTTTTCTGGC TGGCAGCTCC GCTGACCGGT
ATGATCGTAC AGCCTATTAT CGGCCACTAT AGCGACCGCA CCTGGAATAA ACTGGGACGT
CGCAGACCTT ACTTTCTTGT AGGTGCTATC GCTACGGCAC TGGCGCTGAT GTTACTGCCT
AATTCCTCAT TACTGGCAGC TATGCTGCCG CCGGTATTGA TAGGGGCGGG TATGCTGACA
TTGATGGATG CTTCTATCAA CGTGGCCATG GAACCTTTCC GGGCACTGGT GGCGGATAAC
CTGCCGGATG AGCAGCGGAG CCAGGGATTC TCTGCCCAGA CCTTTCTGAT AGGGGCAGGG
GCCGTACTGG GTTCCTCTTT GCCGTATCTG CTGGCAGAAT ACATGGGCGT ATCCAAAACA
GCGGCGCCGG GTGTAGTACC TGATAATGTG ATCTATTCCT TTTATGTAGG CGCGCTTGTA
TTGCTTACTA CGATTCTCTG GTCGATATTT ACATCATCAG AATATTCTCC GGAGGAGTTT
GCAAAATTCA ATCCTGGACA GGCTGCAGAG CAGCATGGCG GCGGATTGAA AACGATCCTC
AAGGATTTTT CCAATATGCC TTCGGCAATG AAACAACTGG GACTGGTACA ATTCTGCTCC
TGGTTCGCCT TATTCTCTAT GTGGGTATTT ACTACACCAG CAGTCGCGCA CCACATTTAT
AAAGTAATGC CCGGCGATAC TTCGTCTGCA CTTTTTGCTG ATGCCGGCAA TAAGGTGGGT
TTCCTGTTCA GTATCTACAG TGCGGTGTCA GCAGTATATG CGCTGGTACT ACCGGCTATT
GCCCGCAAAA CTTCCCGCAG GGCCGCACAT GCTATTTCCC TGACAGCAGG TGGATTATCA
CTCATTTCAT TTTATTTTAT ACAGAACCCT GATCTGCTGA TCTGGCCAAT GATCGGTATT
GGTATGGCAT GGGGTAGTAT CCTGTCAACA CCATACGCGA TATTGTCCGG GGTAATACCG
TCTCACAAAA CGGGTGTATA CATGGGTATC TTTAATTTCT TCATCACCTT CCCGCAGATT
GTCAATGGCA TCTTCGGAGG ACTGATCGTA AAGCACCTGT TCCAGGGAGA AGCTGTTTTC
GCACTCGTGA TGGGCGGCGC ATTTATGATC ATTGCTGCGA TAGCGGTAAT GTATGTGAAG
GATAGAGAAA AGACAGCTGC GGAACAATTG GTGTCAACTT ATGGTGTAGC GTAG
 
Protein sequence
MKGMAKPRLS AARIWNMSMG FFGIQFGFAL QNGNASRILQ TYGAEVEHLS LFWLAAPLTG 
MIVQPIIGHY SDRTWNKLGR RRPYFLVGAI ATALALMLLP NSSLLAAMLP PVLIGAGMLT
LMDASINVAM EPFRALVADN LPDEQRSQGF SAQTFLIGAG AVLGSSLPYL LAEYMGVSKT
AAPGVVPDNV IYSFYVGALV LLTTILWSIF TSSEYSPEEF AKFNPGQAAE QHGGGLKTIL
KDFSNMPSAM KQLGLVQFCS WFALFSMWVF TTPAVAHHIY KVMPGDTSSA LFADAGNKVG
FLFSIYSAVS AVYALVLPAI ARKTSRRAAH AISLTAGGLS LISFYFIQNP DLLIWPMIGI
GMAWGSILST PYAILSGVIP SHKTGVYMGI FNFFITFPQI VNGIFGGLIV KHLFQGEAVF
ALVMGGAFMI IAAIAVMYVK DREKTAAEQL VSTYGVA