Gene Cpin_5039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5039 
Symbol 
ID8361215 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6284745 
End bp6286463 
Gene Length1719 bp 
Protein Length572 aa 
Translation table11 
GC content45% 
IMG OID644967188 
ProductCarbamoyltransferase 
Protein accessionYP_003124673 
Protein GI256424020 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG2192] Predicted carbamoyl transferase, NodU family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.104774 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATACTC TTGGAATCAA TGCTGCTTTT CATGACTCCG CAGCATGTCT GGTAAAAGAT 
GGCCAGCTGA TCGCAGCGGC AGAAGATGAA CGCTTTACGC ATGTCAAACA TGGAAAAAGA
CCCATTCCTT TTTCAGCTTA TGAGCTTCCT TATCATGCGA TAGACTATTG TTTAAAAACG
GCGAACATTC ATCTCAGCGA TGTTGATCAC ATATCTTATT CTTTCGATCC GTTTATTCTG
CTTCCTGAAG AGGACGCAGC AAAAAGTCTG ATCGATATAC CATTGAGACA ACCTTCGCAA
TTTGTACCGG AAAAATGGGT CTCTCCATGG GATCCGTTAT TTCTCTCTGC CATTATCAAT
GCACCCGGCC AACTGACGGA CGGCTATCCG CATCATTTAC AGCAACGCTT CCGTGGCGCC
AGATTTAACG ATGATCAATG GCACTTTGTA GAACATCATT TATGTCATGC TGCCAGTGCA
TTTCTGCCTT CACCTTATCA TGAAGCCGCT GTGTTGACAA TTGATGGGCG TGGTGAAAAA
GCTACCACTA CGTTCAGCAT GGGTAAAGGA AATGACCTGC AGCGCCTCAG TCAGGTGGAT
ATGCCGCATT CGCTCGGATT ATTGTATGAG AAAGTCACAA CTCACCTTGG CTTCCTGCAT
TCTTCTGATG AATACAAGGT AATGGCGCTG GCATCATACG GTAAACCGGT TTTCGTCAAT
GCATTCCGTT CAATGATCAA TATGCTGGAC AATGGACAGT ATGCTATCCA AGACGAGCGC
ATGGTTGAAT TACTTGGCCC TGCAAGGAAA AAAGGTGATG AGTTCACTGC TCATCACTTT
AATATCGCGC ATTCATTACA GGCTGTGCTG CAGGAATCCG TACTGCAACT GACTGACTGG
CTATACAAAG AAACGCAGGC AGATAATCTT TGTTTTGCAG GCGGAGTTGC CTTAAATTGT
GTATTGAATG CAAAGATCAG AGACGCAGGT ATTTTTAAAA ATATCTGGGT ACAACCCGCA
TCAGGAGATG CTGGCACAGC GCTCGGTGCT GCTTTATGGA CCGATGCAAA AGAACGTGGC
AGCCAGGAAA AAACCTTCCA CATGGATCAT GCTTACTGGG GCCCGGAATA TGGCGATGAC
GAGATAAAAG CCTTCCTCGA CTGGACAAAA ACACCTTATA CAAAACTGGA GAATGTAGCG
GAAGAAACAG CCGCACTGTT AGCACAGGAT AAAATCATTG GCTGGTATCA GGGACGTATG
GAGTTTGGTC CACGTGCATT AGGCAGCCGT TCAATTCTCG CTTCTCCTAT TTCTGCGGAT
ATGCAGGCCA GACTAAATGA GGTGAAAGAT CGTGAGGACT TCCGTCCCGT AGCGCCTGTT
GTACTGGAAG ACGTCGCTGC TGAGTGGTTT GAAGATGCTC ATTTCTCTCC TTTTATGCTG
TTCGTATACA ATGTAAAGGA GGATAAAAAA GATAAAATTC CGGCAGTTAC ACACGTAGAC
GGTACTGCCC GCATACAAAC AATTAACCGG GATCAACATC CGCGTTATTA TGATCTCTTA
CAGGCTTTTT ACAAACAGAC AGGCGTACCT GTATTGATCA ACACTTCATT TAACACGTTA
GGTAAACCCA TCGTATGTAC ACCGCGGGAT GCAGTAGAAT GCTTCTGGTC ATCCCCTTTT
GACGCTCTTG TAATAGGTTC TTTTCTTGTT CAGAAATAA
 
Protein sequence
MYTLGINAAF HDSAACLVKD GQLIAAAEDE RFTHVKHGKR PIPFSAYELP YHAIDYCLKT 
ANIHLSDVDH ISYSFDPFIL LPEEDAAKSL IDIPLRQPSQ FVPEKWVSPW DPLFLSAIIN
APGQLTDGYP HHLQQRFRGA RFNDDQWHFV EHHLCHAASA FLPSPYHEAA VLTIDGRGEK
ATTTFSMGKG NDLQRLSQVD MPHSLGLLYE KVTTHLGFLH SSDEYKVMAL ASYGKPVFVN
AFRSMINMLD NGQYAIQDER MVELLGPARK KGDEFTAHHF NIAHSLQAVL QESVLQLTDW
LYKETQADNL CFAGGVALNC VLNAKIRDAG IFKNIWVQPA SGDAGTALGA ALWTDAKERG
SQEKTFHMDH AYWGPEYGDD EIKAFLDWTK TPYTKLENVA EETAALLAQD KIIGWYQGRM
EFGPRALGSR SILASPISAD MQARLNEVKD REDFRPVAPV VLEDVAAEWF EDAHFSPFML
FVYNVKEDKK DKIPAVTHVD GTARIQTINR DQHPRYYDLL QAFYKQTGVP VLINTSFNTL
GKPIVCTPRD AVECFWSSPF DALVIGSFLV QK