Gene Cpin_5023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5023 
Symbol 
ID8361199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand+ 
Start bp6273160 
End bp6273765 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content46% 
IMG OID644967172 
Producthypothetical protein 
Protein accessionYP_003124657 
Protein GI256424004 
COG category[S] Function unknown 
COG ID[COG3652] Predicted outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0763629 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACAC TAACCGTTGG GCTGATTACT GCCATGTTAC TTTATGCATG CGGCGGAAAT 
GATAGCAAAA GCCAGGAGGA AGCCAGTAAA GACAGCACCA GTGCAATGTC GGAAAGCATG 
GACCATATCA GCAATGCAGC CGTTAACTTC GCTACAAACG TCGCTAATGC CAATCTGAAG 
GAAATTGAAC TGGGAAAACT CGCGCAAAAG AATGCGAATT ACAGCCGGTT AAAAGATTTT 
GCACAGAAGA TGATTACGGC ACATACCCAA TCGAACGAAG AGCTGCAAAA AGCCTGTTTT 
AGCGCCGGTG TTACTTTACC GAACGGGTTA TCTGAACAGG ACCATAAAGA TGTTGACGAT 
ATGGCAAAGA AAAAAGACAA GGCGTTTGAC CGGGCCTATA TCAAAGCCAT GGTGAAAGAA 
CACCAGGCTA CAATGGAAAA GCTGGATGTC GCTGCGCATG ACCTGAAAGA TACCGCCCTG 
CAGCATTATG CGCAGAAAAC ATTGCCCATC GTCACGGCGC ACCTGGAAGA AGCTAGAAAC 
ATACTGGAAG ACGTGCGTAA AAACTATGCG CCCGATCAGT TTGACGATGT AGAATCTTAT 
CAATAG
 
Protein sequence
MKTLTVGLIT AMLLYACGGN DSKSQEEASK DSTSAMSESM DHISNAAVNF ATNVANANLK 
EIELGKLAQK NANYSRLKDF AQKMITAHTQ SNEELQKACF SAGVTLPNGL SEQDHKDVDD 
MAKKKDKAFD RAYIKAMVKE HQATMEKLDV AAHDLKDTAL QHYAQKTLPI VTAHLEEARN 
ILEDVRKNYA PDQFDDVESY Q