Gene Cpin_4954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4954 
Symbol 
ID8361130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6196883 
End bp6199933 
Gene Length3051 bp 
Protein Length1016 aa 
Translation table11 
GC content46% 
IMG OID644967103 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_003124588 
Protein GI256423935 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0561599 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAATGCAA TACTACAGCA GGAATTAAAT AGATTGACTG AATTAGCGGC TTTGGTTTGC 
AATGTACAGG TAGCAACGAT CTCTATCAGT GATGATCAAC AGCCATCCGT TGTCATTGCA
CATGGCATTG CTATAACCGT ACCTGAAGCT TCATTCCATC GTACATACGA TCTGCAGGAC
AATACCGGGC GTATGCTGGG TACCCTTACG CTTAGCGATA CCCGTTCACT TCAGTGGGAC
CGTGGCCAGG AAAAGGCAAT CGCCTTGCTG GTCCAGGAGA TCGTCTCTCA TATTACAGAT
CATTATCATT ATGAGGAATT GCTGGATAGC GAGCGCAATT TCAGGGCTTT CTTTGAGAAT
TCTCATGGTT TGATGTGTAC ACACGACCTG GAAGGCAGGT TACTAAGCGT AAATAATGCC
TGTGCAGCTA TATTGGGTTA TACCTGCGAG GAAATGAAGG ACATGACCTT GGCCGACATC
GTTCCTGCCC AATATGAAAA TGAGCTCCAT GCTTATCTGA AGAAAATCGG TACGGAAGGG
AAAGCGCATG GTCTCATGAT TACCATTCAT AAAGATGGGA CCATGGGCTC TGTATTGTTC
AACAATGTGC TGTTCAGGAA TCTCAAGGGG GAATCTTATG TGATCGGCAA CGCCATTGAT
GTAACGGAAA GGCAGGTATT GGAAAGAGAC CTCAAGCGTA CCCGTGAGAT ACTGGAACGT
ACCAGCCAGA TGTCCCGTAT CGGGGGATGG GAAGCTGACC TGGTGAACCG GGAACTGTTC
TGGTCTGACG TCACAAAGGC TATTCACGAG GTACCTGGTA ATTTTCAGCC AACCATGGCC
ACGGCCATCG GTTTTTATAA AGAAGGGGAT AACCGGGAGG CTATTTCAGA AGCGCTCCGC
ATTAGTGTGG AAACAGGGGA AGCCTGGGAT CTGCAGTTGC AGATCATCAC TGCGAAAGGA
CAGGAGAAAT GGGTCAGGGC GATTGGTAAC GCTGAATTTG AAAACGGCAA ATGTAAACGT
CTGTATGGCA CCTTCCAGGA TATATCTGCT ACCAAAGAAG CGGAACACCA GCTGATCCTG
CAGAAGTCCA ATCTGGCCGC CGCCAAGCAA CAGGCGGAGC AGGCGAATAT GGCCAAATCA
GAATTCCTGG CCAATATGAG CCATGAGATC CGGACGCCTC TAAACGGTGT GATCGGGTTT
ACCGAACTGG TTTTAAAGAC TGATCTGAAT GAAACACAGC ACCAGTATCT GTCTATCGTC
AACCAGTCGG CCAACGCCCT GCTGAGCATC ATCAATGATA TCCTGGATTT TTCTAAAATA
GAATCCGGTA AACTCGAACT GGATATTGAC AAATACGATC TATATGAATT CAGCAGCCAG
GTAAGTGATA TCGTCAGTTA TCAGGCCCAG CACAAAGGTC TGGAGATGTT GCTGAATGTA
TCCACACAAT TACCCCGGTT TGCCTGGTTT GATGAAGTCC GCCTGAAACA GATCCTCATT
AATCTCCTGG GAAATGCGGT TAAATTCACC AGTAACGGAG AGATCGAATT AAAGGTACAT
CCCCTGGAAT TCCTGGAAGA CGACAAAGCA AAAATACGCT TTGAAGTAAG GGATACCGGT
ATCGGTATCA AACCGGAAAA GCAGCTGAAG ATATTTGAAG CCTTCCGCCA GGAAGATGCT
TCCACCACGA AAAAATACGG TGGTACCGGA TTAGGACTGA CCATCTCCAA TAAGCTGCTG
GCACTGATGG GAAGCGAACT ACACATTGAA AGCGGTGTTA GTCAGGGTAG TACTTTTTAT
TTTGATATTG TATTAACCAC GGTAGAAGCG CCCGCCGAAA ACCAGGATAA CCTGGAACGT
ATCAAAGACG TCCTGATCGT AGATGATAAT GACAACAACC GTCATATCCT GAAGGAGATG
TTACAGATGA AAGGGATCTC CTGTACGGAG GCCCGTAGCG GATTTGACGC ACTGGAATTA
TTATCGGCCA ATGATGGTTA TGACATCATC CTTATGGATT ATCACATGCC GTATATGGAC
GGACTGGAAA CTGTCAGAAA GATGCGACAT CATTTCGGTA TGAAACCCCG TGAACAGGGC
ATTGTACTGT TGCATAGCTC TTCTGATGAT GAACGGATCA TTACCGCCTG TGAGCAATTA
GGTATCGGAC AACGGATGGT GAAACCGATT AAAATTCATG AATTATATAA TAGTCTTTCC
TTACTGATCA ATAAAGAAAA GCGAAAACGC CACCAGCAGG AACAGCAAGC AGAACAATGG
ATTGGTGGCC GTTTAAATAT CCTGATTGTG GAGGATAATC CGATTAATAT GTTGCTGGCG
ACCACCGTCG TTAAACGTAT CGCACATGAT GCCCGTATTT ATGAGGCACA GGATGGTATA
GACGCTATCC GGATCTGCCG CGCACAATTG CCTGATCTGA TCCTCATGGA TATACAGATG
CCTATCATGA ATGGTTATGA AGCAACAGGC CGCATCCGCG AGATCAAAGG AGGACAGCGT
ATACCCATTA TTGCATTGAC CGCCGGTAAC CTGAAAGGAG AAAGAGAAAA GTGTATGGAG
GCGGGTATGA ATGACTTTAT TTCCAAGCCG CTTATACAGG AGAAACTGAT GGAACTCTTC
CGGAAATGGC TGACCGTTCC AGTGGAAGAA GAACCCGTGC ATCTCACTAC TGTCAGGGAA
GTGAAAGAAG AGCATTTCAA TATTGCTACC TTAGAGACAT ACCTGATGGG AGAGGACAGG
GCGGTATTAA AACAGTTGCT AAAACTGACG ATCGATGAAT TGAAATCGGC GATATCAGAA
TTACAGTCGG CAGCAGCAGC GGTAGATATC CGCAAGATCA ACCGTATCGG GCATAAGATA
CGTGGTACCT CTCAGATCAT AGGTTTGAGT AAATTATCGC GTATTGCTGA TGAGCTGGAT
ATGCTGACGG TGAAACATGA GCCGGAATTC AGTCAGCTGA TGGAAGCAAT GCAGCTGGAA
TCTTTGCTGA CGATTCAGTT GATGGAAGAG CAGATTGCAA CCTATGGGTA A
 
Protein sequence
MNAILQQELN RLTELAALVC NVQVATISIS DDQQPSVVIA HGIAITVPEA SFHRTYDLQD 
NTGRMLGTLT LSDTRSLQWD RGQEKAIALL VQEIVSHITD HYHYEELLDS ERNFRAFFEN
SHGLMCTHDL EGRLLSVNNA CAAILGYTCE EMKDMTLADI VPAQYENELH AYLKKIGTEG
KAHGLMITIH KDGTMGSVLF NNVLFRNLKG ESYVIGNAID VTERQVLERD LKRTREILER
TSQMSRIGGW EADLVNRELF WSDVTKAIHE VPGNFQPTMA TAIGFYKEGD NREAISEALR
ISVETGEAWD LQLQIITAKG QEKWVRAIGN AEFENGKCKR LYGTFQDISA TKEAEHQLIL
QKSNLAAAKQ QAEQANMAKS EFLANMSHEI RTPLNGVIGF TELVLKTDLN ETQHQYLSIV
NQSANALLSI INDILDFSKI ESGKLELDID KYDLYEFSSQ VSDIVSYQAQ HKGLEMLLNV
STQLPRFAWF DEVRLKQILI NLLGNAVKFT SNGEIELKVH PLEFLEDDKA KIRFEVRDTG
IGIKPEKQLK IFEAFRQEDA STTKKYGGTG LGLTISNKLL ALMGSELHIE SGVSQGSTFY
FDIVLTTVEA PAENQDNLER IKDVLIVDDN DNNRHILKEM LQMKGISCTE ARSGFDALEL
LSANDGYDII LMDYHMPYMD GLETVRKMRH HFGMKPREQG IVLLHSSSDD ERIITACEQL
GIGQRMVKPI KIHELYNSLS LLINKEKRKR HQQEQQAEQW IGGRLNILIV EDNPINMLLA
TTVVKRIAHD ARIYEAQDGI DAIRICRAQL PDLILMDIQM PIMNGYEATG RIREIKGGQR
IPIIALTAGN LKGEREKCME AGMNDFISKP LIQEKLMELF RKWLTVPVEE EPVHLTTVRE
VKEEHFNIAT LETYLMGEDR AVLKQLLKLT IDELKSAISE LQSAAAAVDI RKINRIGHKI
RGTSQIIGLS KLSRIADELD MLTVKHEPEF SQLMEAMQLE SLLTIQLMEE QIATYG