Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4954 |
Symbol | |
ID | 8361130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 6196883 |
End bp | 6199933 |
Gene Length | 3051 bp |
Protein Length | 1016 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644967103 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_003124588 |
Protein GI | 256423935 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0561599 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAATGCAA TACTACAGCA GGAATTAAAT AGATTGACTG AATTAGCGGC TTTGGTTTGC AATGTACAGG TAGCAACGAT CTCTATCAGT GATGATCAAC AGCCATCCGT TGTCATTGCA CATGGCATTG CTATAACCGT ACCTGAAGCT TCATTCCATC GTACATACGA TCTGCAGGAC AATACCGGGC GTATGCTGGG TACCCTTACG CTTAGCGATA CCCGTTCACT TCAGTGGGAC CGTGGCCAGG AAAAGGCAAT CGCCTTGCTG GTCCAGGAGA TCGTCTCTCA TATTACAGAT CATTATCATT ATGAGGAATT GCTGGATAGC GAGCGCAATT TCAGGGCTTT CTTTGAGAAT TCTCATGGTT TGATGTGTAC ACACGACCTG GAAGGCAGGT TACTAAGCGT AAATAATGCC TGTGCAGCTA TATTGGGTTA TACCTGCGAG GAAATGAAGG ACATGACCTT GGCCGACATC GTTCCTGCCC AATATGAAAA TGAGCTCCAT GCTTATCTGA AGAAAATCGG TACGGAAGGG AAAGCGCATG GTCTCATGAT TACCATTCAT AAAGATGGGA CCATGGGCTC TGTATTGTTC AACAATGTGC TGTTCAGGAA TCTCAAGGGG GAATCTTATG TGATCGGCAA CGCCATTGAT GTAACGGAAA GGCAGGTATT GGAAAGAGAC CTCAAGCGTA CCCGTGAGAT ACTGGAACGT ACCAGCCAGA TGTCCCGTAT CGGGGGATGG GAAGCTGACC TGGTGAACCG GGAACTGTTC TGGTCTGACG TCACAAAGGC TATTCACGAG GTACCTGGTA ATTTTCAGCC AACCATGGCC ACGGCCATCG GTTTTTATAA AGAAGGGGAT AACCGGGAGG CTATTTCAGA AGCGCTCCGC ATTAGTGTGG AAACAGGGGA AGCCTGGGAT CTGCAGTTGC AGATCATCAC TGCGAAAGGA CAGGAGAAAT GGGTCAGGGC GATTGGTAAC GCTGAATTTG AAAACGGCAA ATGTAAACGT CTGTATGGCA CCTTCCAGGA TATATCTGCT ACCAAAGAAG CGGAACACCA GCTGATCCTG CAGAAGTCCA ATCTGGCCGC CGCCAAGCAA CAGGCGGAGC AGGCGAATAT GGCCAAATCA GAATTCCTGG CCAATATGAG CCATGAGATC CGGACGCCTC TAAACGGTGT GATCGGGTTT ACCGAACTGG TTTTAAAGAC TGATCTGAAT GAAACACAGC ACCAGTATCT GTCTATCGTC AACCAGTCGG CCAACGCCCT GCTGAGCATC ATCAATGATA TCCTGGATTT TTCTAAAATA GAATCCGGTA AACTCGAACT GGATATTGAC AAATACGATC TATATGAATT CAGCAGCCAG GTAAGTGATA TCGTCAGTTA TCAGGCCCAG CACAAAGGTC TGGAGATGTT GCTGAATGTA TCCACACAAT TACCCCGGTT TGCCTGGTTT GATGAAGTCC GCCTGAAACA GATCCTCATT AATCTCCTGG GAAATGCGGT TAAATTCACC AGTAACGGAG AGATCGAATT AAAGGTACAT CCCCTGGAAT TCCTGGAAGA CGACAAAGCA AAAATACGCT TTGAAGTAAG GGATACCGGT ATCGGTATCA AACCGGAAAA GCAGCTGAAG ATATTTGAAG CCTTCCGCCA GGAAGATGCT TCCACCACGA AAAAATACGG TGGTACCGGA TTAGGACTGA CCATCTCCAA TAAGCTGCTG GCACTGATGG GAAGCGAACT ACACATTGAA AGCGGTGTTA GTCAGGGTAG TACTTTTTAT TTTGATATTG TATTAACCAC GGTAGAAGCG CCCGCCGAAA ACCAGGATAA CCTGGAACGT ATCAAAGACG TCCTGATCGT AGATGATAAT GACAACAACC GTCATATCCT GAAGGAGATG TTACAGATGA AAGGGATCTC CTGTACGGAG GCCCGTAGCG GATTTGACGC ACTGGAATTA TTATCGGCCA ATGATGGTTA TGACATCATC CTTATGGATT ATCACATGCC GTATATGGAC GGACTGGAAA CTGTCAGAAA GATGCGACAT CATTTCGGTA TGAAACCCCG TGAACAGGGC ATTGTACTGT TGCATAGCTC TTCTGATGAT GAACGGATCA TTACCGCCTG TGAGCAATTA GGTATCGGAC AACGGATGGT GAAACCGATT AAAATTCATG AATTATATAA TAGTCTTTCC TTACTGATCA ATAAAGAAAA GCGAAAACGC CACCAGCAGG AACAGCAAGC AGAACAATGG ATTGGTGGCC GTTTAAATAT CCTGATTGTG GAGGATAATC CGATTAATAT GTTGCTGGCG ACCACCGTCG TTAAACGTAT CGCACATGAT GCCCGTATTT ATGAGGCACA GGATGGTATA GACGCTATCC GGATCTGCCG CGCACAATTG CCTGATCTGA TCCTCATGGA TATACAGATG CCTATCATGA ATGGTTATGA AGCAACAGGC CGCATCCGCG AGATCAAAGG AGGACAGCGT ATACCCATTA TTGCATTGAC CGCCGGTAAC CTGAAAGGAG AAAGAGAAAA GTGTATGGAG GCGGGTATGA ATGACTTTAT TTCCAAGCCG CTTATACAGG AGAAACTGAT GGAACTCTTC CGGAAATGGC TGACCGTTCC AGTGGAAGAA GAACCCGTGC ATCTCACTAC TGTCAGGGAA GTGAAAGAAG AGCATTTCAA TATTGCTACC TTAGAGACAT ACCTGATGGG AGAGGACAGG GCGGTATTAA AACAGTTGCT AAAACTGACG ATCGATGAAT TGAAATCGGC GATATCAGAA TTACAGTCGG CAGCAGCAGC GGTAGATATC CGCAAGATCA ACCGTATCGG GCATAAGATA CGTGGTACCT CTCAGATCAT AGGTTTGAGT AAATTATCGC GTATTGCTGA TGAGCTGGAT ATGCTGACGG TGAAACATGA GCCGGAATTC AGTCAGCTGA TGGAAGCAAT GCAGCTGGAA TCTTTGCTGA CGATTCAGTT GATGGAAGAG CAGATTGCAA CCTATGGGTA A
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Protein sequence | MNAILQQELN RLTELAALVC NVQVATISIS DDQQPSVVIA HGIAITVPEA SFHRTYDLQD NTGRMLGTLT LSDTRSLQWD RGQEKAIALL VQEIVSHITD HYHYEELLDS ERNFRAFFEN SHGLMCTHDL EGRLLSVNNA CAAILGYTCE EMKDMTLADI VPAQYENELH AYLKKIGTEG KAHGLMITIH KDGTMGSVLF NNVLFRNLKG ESYVIGNAID VTERQVLERD LKRTREILER TSQMSRIGGW EADLVNRELF WSDVTKAIHE VPGNFQPTMA TAIGFYKEGD NREAISEALR ISVETGEAWD LQLQIITAKG QEKWVRAIGN AEFENGKCKR LYGTFQDISA TKEAEHQLIL QKSNLAAAKQ QAEQANMAKS EFLANMSHEI RTPLNGVIGF TELVLKTDLN ETQHQYLSIV NQSANALLSI INDILDFSKI ESGKLELDID KYDLYEFSSQ VSDIVSYQAQ HKGLEMLLNV STQLPRFAWF DEVRLKQILI NLLGNAVKFT SNGEIELKVH PLEFLEDDKA KIRFEVRDTG IGIKPEKQLK IFEAFRQEDA STTKKYGGTG LGLTISNKLL ALMGSELHIE SGVSQGSTFY FDIVLTTVEA PAENQDNLER IKDVLIVDDN DNNRHILKEM LQMKGISCTE ARSGFDALEL LSANDGYDII LMDYHMPYMD GLETVRKMRH HFGMKPREQG IVLLHSSSDD ERIITACEQL GIGQRMVKPI KIHELYNSLS LLINKEKRKR HQQEQQAEQW IGGRLNILIV EDNPINMLLA TTVVKRIAHD ARIYEAQDGI DAIRICRAQL PDLILMDIQM PIMNGYEATG RIREIKGGQR IPIIALTAGN LKGEREKCME AGMNDFISKP LIQEKLMELF RKWLTVPVEE EPVHLTTVRE VKEEHFNIAT LETYLMGEDR AVLKQLLKLT IDELKSAISE LQSAAAAVDI RKINRIGHKI RGTSQIIGLS KLSRIADELD MLTVKHEPEF SQLMEAMQLE SLLTIQLMEE QIATYG
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