| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4942 |
|---|
| Symbol | |
|---|
| ID | 8361118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6179607 |
|---|
| End bp | 6180956 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967091 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_003124576 |
|---|
| Protein GI | 256423923 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.755187 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.782486 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGCA ATTATATACA TCGGTTCCTC TTTTGGATAT TGATTTTCAG AATAGTTCCT
ACATATGCAC AGGACACCGC CGCTTCGCAG GTGCAATTAC CTGAGAAATG GGACTTGCAG
GCTTGTCTGG ACTATGCCAA AACCAATAAC ATTACACTAA ACAGTTACCG GTTAAATCGC
CTTAGCAGTC AGCAGGATCT GGAGCTGTCG AAAGCCGCTG TGCTACCCAA CCTTTCTGCC
AGCGCATCCC CTTCATTGAT ACAGAGTAAG ACCATCGATC CGGCCACCGG TGATTTGAAA
TCGGGCGTAC GGTTTTCTGG GAGTAGTTCG CTGAATTCAT CAGTGACATT GTATAATGGC
GGATACCTGA AGACGGATAT TCAACAGAAA GATTTGCTGG TGAAGATTGC GGGACTGGAT
CTTGCGACGG TTGAAAATGA TATCACGCTG CAGATCACGC AGGCTTATCT TAATATTCTG
CTGGCTAAAG AAAATATCGT GTATGTCAGG GACGTAGTGG CTACGTCCAC TGCGCAGGTG
CAGCAACAGC AACAGTTTTA TGATGTAGGT GCGGTCGCGT TGAAAGATCT TGTTCAGTTA
CAGGCGCAGC TGGCCAATGA TAAATATACG CTTGTCACAG CCGAAAATAC ACACCGGCAA
AACTTACTGA CGCTGAAACA ATTACTGCAA TTGCCGACGG TCACTCCCTT TGAGATCGTT
GAGCCGGATA CACTGATGGG TAACGCTCTA CTGACGCCAT TACTGGATGC ACAGCAGACG
GCATTGGCTA CGCGGCCTGA GGTGAAAAGC AGTGAACTGG GTGTACAGGT AGCCTCACTG
GACGTCAGGA AAGCCAGGGC GGGATATCTG CCGGCATTGA CTGCTGGTGC AGGATTAGGT
ACCAGTTATG CGCATAATGA TAATTACTCT TTTTTACGAC AGCTGGATAA CAATTTTTAT
CAGCAGGTTG GGCTGACTTT ATCGGTACCC ATTTTCAGCC GTCGCGCGAA CAGGGTGAAT
GAGGAAAAGG CGAAAATAGG CGTAGGTCAG GCCGAGCTGA CGTTACAGAA TACACGTACC
AATCTGTCGC AGGAAGTGGA GCGTGCATAC ATTAATGTGC AGAATGCGCA AGGGCAATAT
GACGCAGCCG TTGAACAGTT GCGTTATACC CAGGAAGCCT ACCGGATTGC CAATGAACAA
CTGAAAATCG GTGCAGCGAA TACCGTAGAA GTGTTACAAC AGAAGAATCT CTATGTCCAG
TCCATGCAGT CATACATTCA GGCCAAATAC GCAGCAGCGC TGTATATCAG GATATATGAT
TTCTACAGGG GCGTGCCAGT CCATTTATAG
|
|---|
| Protein sequence | MFSNYIHRFL FWILIFRIVP TYAQDTAASQ VQLPEKWDLQ ACLDYAKTNN ITLNSYRLNR
LSSQQDLELS KAAVLPNLSA SASPSLIQSK TIDPATGDLK SGVRFSGSSS LNSSVTLYNG
GYLKTDIQQK DLLVKIAGLD LATVENDITL QITQAYLNIL LAKENIVYVR DVVATSTAQV
QQQQQFYDVG AVALKDLVQL QAQLANDKYT LVTAENTHRQ NLLTLKQLLQ LPTVTPFEIV
EPDTLMGNAL LTPLLDAQQT ALATRPEVKS SELGVQVASL DVRKARAGYL PALTAGAGLG
TSYAHNDNYS FLRQLDNNFY QQVGLTLSVP IFSRRANRVN EEKAKIGVGQ AELTLQNTRT
NLSQEVERAY INVQNAQGQY DAAVEQLRYT QEAYRIANEQ LKIGAANTVE VLQQKNLYVQ
SMQSYIQAKY AAALYIRIYD FYRGVPVHL
|
|---|
| |