Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4924 |
Symbol | |
ID | 8361100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 6158412 |
End bp | 6159686 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644967073 |
Product | Xylose isomerase domain protein TIM barrel |
Protein accession | YP_003124558 |
Protein GI | 256423905 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4952] Predicted sugar isomerase |
TIGRFAM ID | [TIGR02629] L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000076523 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.290794 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATAG AAAAATTCCA GGCCGCTGCT TTTAATGATT TCCATATACA GGCACATGAG CGCAATTTTG AGCATGTTGC AGCGAATGTT CCCGACATAC AGAACCTCAT TCAGAAATTA CAGGATTTCC AGGTAGCGAT TCCCAGTTGG GCACTGGGTA CAGGTGGTAC CCGTTTTGGC CGTTTCTCCG GAGGTGGGGA ACCGCGTAAT CTTGAAGAGA AAATCTCCGA TATCGGCATA TTACACGCAC TGAACAGAAG CAGCGGGGCT ATTTCTCTGC ATATCCCCTG GGATATTCCG GAGAATGCAG CCAGCATTAA AGCATTGGCA GCGCAATATG ACATCCGTTT TGATGCGGTT AATTCCAATA CTTTCCAGGA CCAGGCGGAT CAGGCGCATA GCTATAAATT CGGCTCCCTG CATCATGTAG ACAAGGCTGT CCGCAAACAG GCCATAGAAC ATAACATTGA AGTGATCAGA TATGGCGTAG AACTTGGATC CAACGCGCTC AGTCTCTGGC TGGCAGATGG TTCCTGTTTC CCTGGTCAGC TGAATTTCAG AGGCGCCTTC AAACGTACGC TGGATAGTTT ACAGGAGATT TATGCGGCAT TACCGGATGC CTGGAAATTA TATATCGAAT ACAAGGCATT TGAGCCTAAT TTTTACTCTA CCACCATCGG TGACTGGGGA CAATCCCTGC TTTTCGCGAA TAAGCTGGGT CCTAAAGCGT ATACGCTGGT TGACCTGGGA CATCATCTGC CGAATGCCAA TATTGAGCAG ATCGTTTCCC TATTGCTGAT GGAAGGCAAA CTGGCCGGTT TCCACTTCAA CGATTCCAAA TACGGTGATG ACGACCTGAC TGTAGGTAGC ATCAACCCTT ATCAGCTTTT CCTGATCTTC AATGAACTGG TGGAGGGAAT GAATGCCCGT GGTATGAACC ATGCGACTGA CCTGGGTTGG ATGATCGATG CTTCTCATAA TGTGAAAGAT CCGCTGGAAG ACCTTTTACA ATCCGTTGAA GCCATCATGA TCGCGTATGC ACAGGCGCTG CTGGTAGATA CAAAAGCATT ACAGACCGCC CAACAGAACA ACGATGTGGT GGCAGCACAG GAAATATTAC AGGCTGCTTA CCGCATGGAT GTTCGTCCGC TGGTAGCGCA GGCACGTCTG CAGGCAGGAG GTGTTTTACA ACCTGTTGCG TTCTATCGTG AGTTTAAGAT AAGAGAACAG CTGATTAAAG AAAGAGGGCT GAAGACCGTT GCTACAGGAC TTTAG
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Protein sequence | MNIEKFQAAA FNDFHIQAHE RNFEHVAANV PDIQNLIQKL QDFQVAIPSW ALGTGGTRFG RFSGGGEPRN LEEKISDIGI LHALNRSSGA ISLHIPWDIP ENAASIKALA AQYDIRFDAV NSNTFQDQAD QAHSYKFGSL HHVDKAVRKQ AIEHNIEVIR YGVELGSNAL SLWLADGSCF PGQLNFRGAF KRTLDSLQEI YAALPDAWKL YIEYKAFEPN FYSTTIGDWG QSLLFANKLG PKAYTLVDLG HHLPNANIEQ IVSLLLMEGK LAGFHFNDSK YGDDDLTVGS INPYQLFLIF NELVEGMNAR GMNHATDLGW MIDASHNVKD PLEDLLQSVE AIMIAYAQAL LVDTKALQTA QQNNDVVAAQ EILQAAYRMD VRPLVAQARL QAGGVLQPVA FYREFKIREQ LIKERGLKTV ATGL
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