Gene Cpin_4897 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4897 
Symbol 
ID8361073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand+ 
Start bp6125794 
End bp6126375 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content44% 
IMG OID644967047 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003124532 
Protein GI256423879 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.684326 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.293164 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTAAAG AAGTATTATT CAACGAAGTC ACCGTGTTAC AGAAAGCGAC CGCTTTATTC 
TTGCATAAGG GGTACAATGG TACGTCAATG GATGATCTTA CAAAGGCAAC AGGACTGAGT 
CGTTCCAGTT TGTACAACTC TTTTGGTGAT AAGCATAGTC TGTTTATCCG TTGTCTGAAC 
TATTATCTGT CAGATCAGGG GAAAATGCTG ATGCAGGCTG TAGGCGCAAC CAATTCACCA 
TTGAAGAAAA TAAAGATCGC GTTTAAATAC ATGGTGGATG TAATCCTGCG GGATGACAAA 
AGAGATGGTT GTCTGATGGT CAACACCACA ACAGAACTCT CCAATGTAGA TGAGGAAGTA 
GGTGCGATGG TGTTACAGAA TACAGATGCG ATGGTACATC TTTTCCAGCA ATGGGTGAAA 
GATGCACAGC AACAGGGTGA GATCAGCAAA ACCTTTACGC CGCAGGCGAT TGCAAAACAT 
CTGTTCAATA CGTATAGTGG TCTGCGTATC AGCGGGCAGG CGAGACCTGA TAAGAAATCG 
CTGGATGATA TTGTGAAAGT GGCACTTTCC GTACTCGTCT GA
 
Protein sequence
MPKEVLFNEV TVLQKATALF LHKGYNGTSM DDLTKATGLS RSSLYNSFGD KHSLFIRCLN 
YYLSDQGKML MQAVGATNSP LKKIKIAFKY MVDVILRDDK RDGCLMVNTT TELSNVDEEV 
GAMVLQNTDA MVHLFQQWVK DAQQQGEISK TFTPQAIAKH LFNTYSGLRI SGQARPDKKS 
LDDIVKVALS VLV