| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4864 |
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| Symbol | |
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| ID | 8361040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6083839 |
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| End bp | 6085638 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644967014 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_003124499 |
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| Protein GI | 256423846 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0846936 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.155196 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATTC AGCTAATTAA AGATATTACC ATAGACGGCA AAGAGATCGC CTATGTTATG
TCATTCGAGT TGCACCAGCG CTTCAATGCA CATCACTTTT TTGAAGTACG CTTCAATCAT
GATCTGCTGG GGGCGCCGGG ACTGATAGAA CTGGATGACA GCCGTAACCT GGTCGGTAAG
ACACTCACCG CTTCTTTCGG CGTAGCCGGA GGCAAACAAC AACAATTCTC CGGCGTAGTG
ACCAAGGTAT CGCTGACACA GAGCCATGGT TACCATGGGG TCATCGTGGC CAGTGGATAT
AGTCCGACGA TACTGATAGA ACGTGGCCCT GATCTGGGTT CTTACTATAA TAAAACACTG
TCTGCAATTG TCAGGCTGGC CACACATGAT ACACCCGCAA ACGATCTGCG GATGGTGGTC
AATCCGGAGC GGAAGAAACC CATCGACTAT GTGATGCAAT ACCAGGAAAG TGATTTCGAC
TTTCTCAACC GGCTCAGTGG TGAATACTAT GAGTGGTTTT ACTATGATGG TGAACAACTG
AATTTCGGTA AGCCCGCTTC GCAGACAGAA GTATCGCTGG TGTACGGAAG AGATGTACAA
AGTCTTGATT ATGGGATTGA GGTCGCGCCA TTACGTAACA ACCGCTTTGC TTATAATCCG
CAGCAGGATG AGATGTTGCA GAGTAAGGGC AGTCCCGGCA GTGGTGGCCG TCCGGATCTG
ACACATGCGA GCAGTACATC AGGTAAAACT TTCAGTAAAG TGTTTAATCA GCCTTCGATG
GTCCGTGTAG AGAATAATGC AGAGTTGAAA GAGGTGGTGG ACAATGAGGA GAAAGCCAAT
AGCGGACAAC TGCTGAAGAT CACAGGACGT GGCGATAATC CGGAGGCCGG TATCGGGAAG
ATCATCAATG TGTCTATGAG TCTGCGGCAG GGTACAGGGT TTACGACTAA AAGTCTGGGC
AAGTTTCTGA TTACAGCGAT CGTGCATATG ATAGATGGGG ACGGGAGTTA TTCCAATACA
TTTGAAGGGA TCGTATCTAC GGCGGAGAAA ATATCGTTTA GCGGGTACCG CAGACCAGCT
CCTGATATGT TACTGGCGGA AGTGATCGAT AACGCAGATC CGCTTGGACA GGGCCGGGTA
AGGGTGCAGT TCAAGTGGGT CTGTGAGACA AACGATCCTA CGGTGTGGTT ACGTGTCGTA
ACACCGGATG CAGGAAATAG TACGAAGGTG ACCAAAAACA GGGGCTTTGT GTTTATACCG
GAGAAGGGCG ATCAGGTGCT GGTTGGATTT GAAGATGGCA ATATGGCTCG TCCGATCGTC
ATGGGAAGTG TCTTCCATGG TAAAAACGGT GTTGGCGGTA ATACGAATAA TGACCAGAAG
AGTCTGACGA CTAAAAGCGG TCATACCATC AGCATGGATG ACAGCGGCGG TATCCTGGTG
AAGGATAAGA CGGATCTCAA CTTCATTGCC ATAAACGGGA AGAATGCGAT TACCGTGAAT
ACGGATAACA ACATCACACT GCAGACCGGC AAGGTGATGA TCATCATGGA TAAACAGCAG
GATAAAATCG TTTTGCAGGC CAGGAATATT GAGATCCGTG CGGCAGATGA TTTTACGGTT
ACCGGAGATG GCGCACCTAC CAGGAATGGC AGTATGGAGT TCGGATCCCG GCTGCAGATC
TCTTCGCAGA AAGAATTATC CGTGGTGGGT GCATCCAGTG CGGAGTTGAA TGGTAAGACG
GTGACAATTG CAGGGAGTAA AACAATTATT GAAGGTAGTC CGGTGAAAAT AAATTCATAG
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| Protein sequence | MDIQLIKDIT IDGKEIAYVM SFELHQRFNA HHFFEVRFNH DLLGAPGLIE LDDSRNLVGK
TLTASFGVAG GKQQQFSGVV TKVSLTQSHG YHGVIVASGY SPTILIERGP DLGSYYNKTL
SAIVRLATHD TPANDLRMVV NPERKKPIDY VMQYQESDFD FLNRLSGEYY EWFYYDGEQL
NFGKPASQTE VSLVYGRDVQ SLDYGIEVAP LRNNRFAYNP QQDEMLQSKG SPGSGGRPDL
THASSTSGKT FSKVFNQPSM VRVENNAELK EVVDNEEKAN SGQLLKITGR GDNPEAGIGK
IINVSMSLRQ GTGFTTKSLG KFLITAIVHM IDGDGSYSNT FEGIVSTAEK ISFSGYRRPA
PDMLLAEVID NADPLGQGRV RVQFKWVCET NDPTVWLRVV TPDAGNSTKV TKNRGFVFIP
EKGDQVLVGF EDGNMARPIV MGSVFHGKNG VGGNTNNDQK SLTTKSGHTI SMDDSGGILV
KDKTDLNFIA INGKNAITVN TDNNITLQTG KVMIIMDKQQ DKIVLQARNI EIRAADDFTV
TGDGAPTRNG SMEFGSRLQI SSQKELSVVG ASSAELNGKT VTIAGSKTII EGSPVKINS
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