Gene Cpin_4856 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4856 
Symbol 
ID8361032 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6075114 
End bp6076823 
Gene Length1710 bp 
Protein Length569 aa 
Translation table11 
GC content49% 
IMG OID644967006 
ProductRicin B lectin 
Protein accessionYP_003124491 
Protein GI256423838 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.173308 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0148414 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAA CCTTGTTCGC CTCGGGGCTT TTGCTCGCCC TGTTATCAGG TTGTACCAAG 
AAAGAAAACA GTGAAAATGC CCTTGACAAT TCCTCTTTAA AAGCTGATGC CGTTGTTGCC
GGTTCACCCG TCGGAGATGT AGTAGGAAAA GTAACTGTCG GTTACCAGGG ATGGTTTACC
GCACCTGGCG ATGGCTCTGC TGTAGACAGA TGGACGCACC AGAACCTTGA AATGTGGCCT
GAGATGAAAG AGTATACGAC TAGTTATCAG ACGCCTTTTC CTGCATTGCC TGACGGACGC
CCCGCAAAGA TGTTCTCCTC TTATGACCAG TCTACCGTGG ACGTTCATTT CAGATGGATG
CAGGAGAATG GTATTGACTG TGCTGCCTTG CAGCGTTTTA CCGGGGAGTT ATCCGACCCG
CCGTTTAAGT CTATGCGCGA TGGTATGGCG CAGAAAGTGA GAAATGCGGC TGAAGCGAGT
GGCCGTAAGT TTTATATCAT GTATGATATT TCCGGTGATG CGGATATGCA GAGCCGTATA
AAAACGGATT GGACTAATAC GATCACGGGT ACTTTAAACC TGCTATCTTC TCCTGCTTAT
GCAAAACAGA ACGGCAAGCC TGTTGTCTGC ATTTTCGGGA TGGGATATCT CGGTGCAAAA
GTGCCTGGTG CAGGCGATTC TGCGCAATGC CTGGATGTTA TCAGCTGGTT TAAAAGCCAG
GGATGTTATG TGATCGGTAG TGTACCGATG GACTGGCGTA CGCCGCAGGG GGTATTTACA
AGGGACAACT TTATGACGGT CTATGAGTCA TTTGATATGT TGTCTCCATG GGCAGTGGCT
GCGCAGGTTG GTCCGACATA TCAGCCATGG ATCAAAGGAG ATTACGATTA TTGCGAAGCG
CATGGTATGG ACTATCAACC GATCGCTTAC CCGGGATTCT CTTTTCATAA TACGAATGCG
GGTAGTCCGC TGAATGAAAT TCCGCGCAAT CACGGTGATT TCATGTGGGC ACAGGTAGCC
GTGATGAAAC AGGTAGGAGC AAAGAGTCTG TATGTGGCGA TGTTTGATGA AGTGAATGAG
GGGACTGCTA TTTTCAAAGT AGCGGAGAAT GCATCACAGG CGCCTGCTAA TACGAGTTTT
GTTCACCTGG ATCAGGATGG CGTAGCGGTA TCTTCCGACT TCTATCTGCG TCTTGTGAAT
GATGCAGGTA AAATGATCAA AGGTCAGATT CCTTACCAGG CTACCCATCC AACCCCACAT
GTTATAGGCG GTGCTGGTCC GCTGGCAGAT GGCACCTACA GGATTATCAA CCGTAACAGT
AACCTTGCAC TCGATGCAAA GGGACAGGGC ACGGCGAATG AGACGGCTAT ACAGCAATGG
GGATATTCCG GTGGTACCAA CCAGCAATGG ACTATTACCA GTCTGGGAGG CGATCACTAT
AAGATTATCG GTGTACAGAG TGGAAAGTCG CTTGATATAA AGGGGCAGTC ATTATTGGAT
GGCGCGACAT TGCAGTTGTA TGATTACAAT GCGGGGGCTA ACCAGGACTG GATCATTTCA
CCCGCTGCGG GAGGTGGTTA TACGATCCAG GGCGCTCAAA GTGGTAAGGT GCTGGAGGTA
CCTGCCTTCT CGACGACAGC AGGTATTATC ATCGAACAGT ACGGCGTCAA TAACGGTGCT
AATCAGCAGT GGCTGATCAG CGCTCCCTGA
 
Protein sequence
MKKTLFASGL LLALLSGCTK KENSENALDN SSLKADAVVA GSPVGDVVGK VTVGYQGWFT 
APGDGSAVDR WTHQNLEMWP EMKEYTTSYQ TPFPALPDGR PAKMFSSYDQ STVDVHFRWM
QENGIDCAAL QRFTGELSDP PFKSMRDGMA QKVRNAAEAS GRKFYIMYDI SGDADMQSRI
KTDWTNTITG TLNLLSSPAY AKQNGKPVVC IFGMGYLGAK VPGAGDSAQC LDVISWFKSQ
GCYVIGSVPM DWRTPQGVFT RDNFMTVYES FDMLSPWAVA AQVGPTYQPW IKGDYDYCEA
HGMDYQPIAY PGFSFHNTNA GSPLNEIPRN HGDFMWAQVA VMKQVGAKSL YVAMFDEVNE
GTAIFKVAEN ASQAPANTSF VHLDQDGVAV SSDFYLRLVN DAGKMIKGQI PYQATHPTPH
VIGGAGPLAD GTYRIINRNS NLALDAKGQG TANETAIQQW GYSGGTNQQW TITSLGGDHY
KIIGVQSGKS LDIKGQSLLD GATLQLYDYN AGANQDWIIS PAAGGGYTIQ GAQSGKVLEV
PAFSTTAGII IEQYGVNNGA NQQWLISAP