| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4856 |
|---|
| Symbol | |
|---|
| ID | 8361032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6075114 |
|---|
| End bp | 6076823 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644967006 |
|---|
| Product | Ricin B lectin |
|---|
| Protein accession | YP_003124491 |
|---|
| Protein GI | 256423838 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.173308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0148414 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA CCTTGTTCGC CTCGGGGCTT TTGCTCGCCC TGTTATCAGG TTGTACCAAG
AAAGAAAACA GTGAAAATGC CCTTGACAAT TCCTCTTTAA AAGCTGATGC CGTTGTTGCC
GGTTCACCCG TCGGAGATGT AGTAGGAAAA GTAACTGTCG GTTACCAGGG ATGGTTTACC
GCACCTGGCG ATGGCTCTGC TGTAGACAGA TGGACGCACC AGAACCTTGA AATGTGGCCT
GAGATGAAAG AGTATACGAC TAGTTATCAG ACGCCTTTTC CTGCATTGCC TGACGGACGC
CCCGCAAAGA TGTTCTCCTC TTATGACCAG TCTACCGTGG ACGTTCATTT CAGATGGATG
CAGGAGAATG GTATTGACTG TGCTGCCTTG CAGCGTTTTA CCGGGGAGTT ATCCGACCCG
CCGTTTAAGT CTATGCGCGA TGGTATGGCG CAGAAAGTGA GAAATGCGGC TGAAGCGAGT
GGCCGTAAGT TTTATATCAT GTATGATATT TCCGGTGATG CGGATATGCA GAGCCGTATA
AAAACGGATT GGACTAATAC GATCACGGGT ACTTTAAACC TGCTATCTTC TCCTGCTTAT
GCAAAACAGA ACGGCAAGCC TGTTGTCTGC ATTTTCGGGA TGGGATATCT CGGTGCAAAA
GTGCCTGGTG CAGGCGATTC TGCGCAATGC CTGGATGTTA TCAGCTGGTT TAAAAGCCAG
GGATGTTATG TGATCGGTAG TGTACCGATG GACTGGCGTA CGCCGCAGGG GGTATTTACA
AGGGACAACT TTATGACGGT CTATGAGTCA TTTGATATGT TGTCTCCATG GGCAGTGGCT
GCGCAGGTTG GTCCGACATA TCAGCCATGG ATCAAAGGAG ATTACGATTA TTGCGAAGCG
CATGGTATGG ACTATCAACC GATCGCTTAC CCGGGATTCT CTTTTCATAA TACGAATGCG
GGTAGTCCGC TGAATGAAAT TCCGCGCAAT CACGGTGATT TCATGTGGGC ACAGGTAGCC
GTGATGAAAC AGGTAGGAGC AAAGAGTCTG TATGTGGCGA TGTTTGATGA AGTGAATGAG
GGGACTGCTA TTTTCAAAGT AGCGGAGAAT GCATCACAGG CGCCTGCTAA TACGAGTTTT
GTTCACCTGG ATCAGGATGG CGTAGCGGTA TCTTCCGACT TCTATCTGCG TCTTGTGAAT
GATGCAGGTA AAATGATCAA AGGTCAGATT CCTTACCAGG CTACCCATCC AACCCCACAT
GTTATAGGCG GTGCTGGTCC GCTGGCAGAT GGCACCTACA GGATTATCAA CCGTAACAGT
AACCTTGCAC TCGATGCAAA GGGACAGGGC ACGGCGAATG AGACGGCTAT ACAGCAATGG
GGATATTCCG GTGGTACCAA CCAGCAATGG ACTATTACCA GTCTGGGAGG CGATCACTAT
AAGATTATCG GTGTACAGAG TGGAAAGTCG CTTGATATAA AGGGGCAGTC ATTATTGGAT
GGCGCGACAT TGCAGTTGTA TGATTACAAT GCGGGGGCTA ACCAGGACTG GATCATTTCA
CCCGCTGCGG GAGGTGGTTA TACGATCCAG GGCGCTCAAA GTGGTAAGGT GCTGGAGGTA
CCTGCCTTCT CGACGACAGC AGGTATTATC ATCGAACAGT ACGGCGTCAA TAACGGTGCT
AATCAGCAGT GGCTGATCAG CGCTCCCTGA
|
|---|
| Protein sequence | MKKTLFASGL LLALLSGCTK KENSENALDN SSLKADAVVA GSPVGDVVGK VTVGYQGWFT
APGDGSAVDR WTHQNLEMWP EMKEYTTSYQ TPFPALPDGR PAKMFSSYDQ STVDVHFRWM
QENGIDCAAL QRFTGELSDP PFKSMRDGMA QKVRNAAEAS GRKFYIMYDI SGDADMQSRI
KTDWTNTITG TLNLLSSPAY AKQNGKPVVC IFGMGYLGAK VPGAGDSAQC LDVISWFKSQ
GCYVIGSVPM DWRTPQGVFT RDNFMTVYES FDMLSPWAVA AQVGPTYQPW IKGDYDYCEA
HGMDYQPIAY PGFSFHNTNA GSPLNEIPRN HGDFMWAQVA VMKQVGAKSL YVAMFDEVNE
GTAIFKVAEN ASQAPANTSF VHLDQDGVAV SSDFYLRLVN DAGKMIKGQI PYQATHPTPH
VIGGAGPLAD GTYRIINRNS NLALDAKGQG TANETAIQQW GYSGGTNQQW TITSLGGDHY
KIIGVQSGKS LDIKGQSLLD GATLQLYDYN AGANQDWIIS PAAGGGYTIQ GAQSGKVLEV
PAFSTTAGII IEQYGVNNGA NQQWLISAP
|
|---|
| |