Gene Cpin_4844 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4844 
Symbol 
ID8361020 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6053023 
End bp6054057 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content48% 
IMG OID644966994 
Producttranscriptional regulator, LacI family 
Protein accessionYP_003124479 
Protein GI256423826 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0280353 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.000467686 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAAACG AAAGAGAGGT GACCATATAT GACATCGCCC GGGAACTGAA GATTTCCGCG 
ACCACGGTCA GCCGTGGATT GCAGGACCAT CCTACAATCA GCACGAAAAC CAAAAAGAAG
ATCCTGGACC TTGCTGAACA GATGGGCTAT CGTAGTAACC ACTTTGCACG TAGTCTGCGG
AACCAGAAAA CCAACACATT TGGCATCATC GTTCCCAGGC TGAACAGCCA CTTTATGTCG
TCTGTCATCG CCGGTATTGA AACAGCTGCC AACGAACAGA ATTTCTCCCT GCTCATTGCA
CAGTCCTCAG AGTCTTCTCT AAAAGAAGCC GCCAGCGCCA GAACCATGTT CGACAGCCGG
GTAGACGGCC TGCTGGTCTC CCTGGCCGTA GACACAACAG AGCTAAGCCA CTTTGATAAT
TTCTTCAGAA AGAATATACC GGTCATATTC TTTGACCGCG TACAACAACA TGAAAGCTCT
GTCAATATCC TGATAGACAA CCGCCAGGCG GCCTACAACG CCACCCGGCA CCTGATAGAA
CAGGGTTGCC GCCGGATATT GCATATCACA GCGCCCACTG TACAAAACGT GTATAAAGAC
AGACTAAAAG GCTATAAAGA AGCACTGAGT GAACATAAAA TCAAGTTCAG GGAAGATTAT
GTACTTATTA CGGATCTGAG CCAGGAAGCA GGTGCAGAAG CCGCCAGCAA GATCCTGAAA
ATGAAGCCAA TACCCGACGG TATCTTTGTG GCCAATGATA GTTGTGCAGT CGGTTGTATG
CTGGCATTGA AAGAACAGGG TATCCGCATC CCGCAGGATA TCGCTTTTGT AGGATTCAAT
AATGACCCTG TCACAAAAGT CATAGCACCC AATCTGACCA CCATCAATTA TTCAGGTTAT
GAAATGGGAC AGGTAGCCGC CAGACATCTG ATCAACCATG TCAGAGACGT CTCCTTTATC
AGCAGCACCA ATACCATCAT ACTCCGGTCA GAACTCATTG TAAGGGCATC GTCCCTGAAG
AAAGGCAGTA AGTAG
 
Protein sequence
MANEREVTIY DIARELKISA TTVSRGLQDH PTISTKTKKK ILDLAEQMGY RSNHFARSLR 
NQKTNTFGII VPRLNSHFMS SVIAGIETAA NEQNFSLLIA QSSESSLKEA ASARTMFDSR
VDGLLVSLAV DTTELSHFDN FFRKNIPVIF FDRVQQHESS VNILIDNRQA AYNATRHLIE
QGCRRILHIT APTVQNVYKD RLKGYKEALS EHKIKFREDY VLITDLSQEA GAEAASKILK
MKPIPDGIFV ANDSCAVGCM LALKEQGIRI PQDIAFVGFN NDPVTKVIAP NLTTINYSGY
EMGQVAARHL INHVRDVSFI SSTNTIILRS ELIVRASSLK KGSK