Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4812 |
Symbol | |
ID | 8360988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 6002468 |
End bp | 6005524 |
Gene Length | 3057 bp |
Protein Length | 1018 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644966962 |
Product | TonB-dependent receptor |
Protein accession | YP_003124447 |
Protein GI | 256423794 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000883537 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000000117998 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAATATA TTTTACTGTT GCTGCTGTTG GCCATTTCCC TGTCTTCGAT GGCACAGCAA AAAAGCATAA GCGGTACTGT GAAAGACCTG AATGGCGTAT TGCCTGGTGC GGCAGTTGTC GAGAAGGGCG TGCCTACCAA TGGGGCTATT ACAGATGCGG ACGGCCGGTT TAAACTGACC CTGAAGGGGA AGTCGAATGC GGTGATCGTG AAGCTGATCG GGTTTACGAC CCAGGAAATC AGTGTAACAG GTTTAGTGAC CCTTGATGTC ATATTACAAC CTGCTACACA GGGGATCGAT GAAGTAGTGG TGGTGGGTTT TACGCAGACA AGACGTATTA CAAATACCGG TGCGGTAAGT GGTATCACCG GGGCTGAGAT CAGGAATGTA CCTACTGCCA ACGTGCAGAA TACTCTGATG GGTAAGCTGC CAGGATTTGT GTCGCAGCAA CGTTCCGGTC AGCCGGGAAG AGATGCTTCC GACTTTTTTA TCCGTGGTGT GAGTTCGCTG AACAGCGAGG GAAATAAACC ACTGATCATC GTGGATGATA TTGAATACTC TTACGACCAG TTGCAACAGA TCAACGTCAA TGAGATTGAA AGTATCTCTA TCCTGAAAGA TGCGTCCACT ACCGCGATCT ATGGTATCAA GGGCGCTAAC GGCGTACTGG TGGTGACGAC CCGCAGAGGT AAAAGCGGTC GTCCGCAGGT AAACGTACGA GCAGAATCAG GCTTACAGGC GCCGGTAAAG ACGCCCAGGT TGCTGGATGC TTACAATACG GGATTGCTGG TGAATGAAGC GTATAGGAAT GACGGTCTGA CGCCACTGTT TACGGATGCG GACCTGGAGC TGTTCAGGAA CGGGAAAGAT CCTTATGGTC ATCCGAATAT CAACTGGTAT GAAACGGTGT TTAAGAAATT TGCACAGCAG GCGAATACAA ACGTCGATAT CTCCGGTGGA ACAGAGGCGG TGAAGTATTT TATTTCCGGT GGATTTTTAA CACAGAACGG ACTTGTAAAG GACTTTTCTG ATCCCCGTAA TGAAGTGAAT ACAAACTATT TCTTCCGCAG GTATAACTTC CGCTCCAATC TCGATATGTG GGCAAATAAG ACGCTGACAC TGCGTCTTGA CCTGACAGCT CGTTTTGGTG ATATCAATGA GCCACATGCA GCCAATGTGG TATCGGAAGT CTATAATTTT GAAAAGATAC ATCCTTATTC CGCGCCTATC ATGAACCCGG ATGGTAGTTA TGCATTTGCG GTGGATACAA AGGATAAGTT ACCGACGATC AATGCCCGTC TGGCGAATGG GGGTTATACC CGTAGTAAGC GTACAGACTT TAATGCCTTA TTTGGCGCTA CGCAGCAACT GGACTTTATG ACGAAAGGCT TGTCCCTGAC GGCCCGTGTG GCTTATGCCG GTGTGGAGCA GTATTCCAGG AACCTGTTCC GTTCTGCAGA TCCGCCTTCT TATCATTATA ATCCGGTGGA TGGTTCTTAT ACGCTGGATC CCCGTGGAAA CTACCGTTTG CAGGCTTATC GTGTGACGGG CAATACGGAC CTGTACAGCC GGAATGTGAA CACGCAGGCA TTCCTCAATT ACGACCGTAG CTTTGGCGCC CATACCTTTA ACTCACTCAT ACTATACAAT AGGCAGAGTT ATGCCTTTAA GTCGGATGTT CCGGCCAACT TCCGCGGACT TTCCTTCAAG GCCGGCTACA ACTATCAACA GAAATATCTG ATCGATTTTA ATGGGGCTTA TAATGGTTCT GACCGTTTTC AGGCGAAGAA AAGGAATGGT TTTTTCCCGG CAGTGGGCGT GGGCTGGAAT ATTTCGCAGG AGTCGTTCTT TAAGGAACGT AACCTGCCTT TCAGTCTGCT GAAACTGCGT GGTTCCTATG GCGTAGTAGG CTCTGATGTG ACGTCGGGCA ACCGTTATCT CTATCGTCAG GAGTATTATT ATAGCGGTGG TTATTCCTTC GGGGAAAATG ACTCCCAACA AGGTTCTATT TATGAAGGAG AACTGGGCAA TATGGACGTA AGCTGGGAAA AGGCGAGGAA AGCAGATGTG GGTATCGATA TGAACCTGTT TAAAGACAAG CTTTCTGTGA CGGTCGATTA TTTCCATGAT ATCCGCTATG ATCAGCTGGT GCGGAAGGGT TCTATTCCTG GTATTATCGG TATTGGTTTC AGTCCGACGA ATGTGGCCAG AACGAGCAAC AAAGGTTTCG ACGGACAGAT CAACTACCGT GGCAGCATCC GCCGTGTAAA CTTCACCACC AGCCTGGTAT TCCAGCATTT CAAGAACAAG GTACTGTTCA AGGATGAAGC ACAGCCGGCT TTCCCCTGGT TGAGAGAAAC GGGTCGTCCT ATCGATCAGC CATTCGGCTA TACTTTTATC GGGTATTATA CACCGGAGGA TATTCAGAAG ATCCAGGCGA ACACACATGA CAAACCAGCT ACACCGCTGA GTGAATATCC GATCCAGGCA GGTGATCTGA AATACAGGGA TCTTAACAAC GACGGTATTA TTGATAATAA TGACAGGGGA CCTATCGGTC GTCCGAATCT GGCCAATACG GTGCTGGGTC TAACACTGGC AGCTAACTAC AAAGGGTTTA GTGTGAGTCT GCTGTTCCAG GGTGCGTTTG GATATAGTTT CAGTGTGGTA GGTACCGGTA TCGAGACTTT CCAGAGTCAG TTTCAGCCTA TCCACCAGGA AAGATGGACA CCGGAGAATG CGGATAACGC ACAGTTCCCA CGTCTGACCA GCAATCCGAC TACTGTAAAT AGTGCGCGCA CCTATATGTC AGATTTTTGG TTGATCGATG CGCGTTATGT ACGTCTGAAA ACGATCGATC TGGGGTATCA GTTGCCAAGC CGCTGGTTAC CACAACGCCT TAACAACGCA CGACTGTACC TGAGTGCCTA TAACCTTTTA ACATGGACCA ACTACGATAA GTACCAGCAG GACCCTGAGG TATCCAGTAA CTCTGCGGGC GACGCCTATA TCAATCAGCG CGTTGTCAAT CTGGGGGTGC AGATCGGTTT TAAATAA
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Protein sequence | MKYILLLLLL AISLSSMAQQ KSISGTVKDL NGVLPGAAVV EKGVPTNGAI TDADGRFKLT LKGKSNAVIV KLIGFTTQEI SVTGLVTLDV ILQPATQGID EVVVVGFTQT RRITNTGAVS GITGAEIRNV PTANVQNTLM GKLPGFVSQQ RSGQPGRDAS DFFIRGVSSL NSEGNKPLII VDDIEYSYDQ LQQINVNEIE SISILKDAST TAIYGIKGAN GVLVVTTRRG KSGRPQVNVR AESGLQAPVK TPRLLDAYNT GLLVNEAYRN DGLTPLFTDA DLELFRNGKD PYGHPNINWY ETVFKKFAQQ ANTNVDISGG TEAVKYFISG GFLTQNGLVK DFSDPRNEVN TNYFFRRYNF RSNLDMWANK TLTLRLDLTA RFGDINEPHA ANVVSEVYNF EKIHPYSAPI MNPDGSYAFA VDTKDKLPTI NARLANGGYT RSKRTDFNAL FGATQQLDFM TKGLSLTARV AYAGVEQYSR NLFRSADPPS YHYNPVDGSY TLDPRGNYRL QAYRVTGNTD LYSRNVNTQA FLNYDRSFGA HTFNSLILYN RQSYAFKSDV PANFRGLSFK AGYNYQQKYL IDFNGAYNGS DRFQAKKRNG FFPAVGVGWN ISQESFFKER NLPFSLLKLR GSYGVVGSDV TSGNRYLYRQ EYYYSGGYSF GENDSQQGSI YEGELGNMDV SWEKARKADV GIDMNLFKDK LSVTVDYFHD IRYDQLVRKG SIPGIIGIGF SPTNVARTSN KGFDGQINYR GSIRRVNFTT SLVFQHFKNK VLFKDEAQPA FPWLRETGRP IDQPFGYTFI GYYTPEDIQK IQANTHDKPA TPLSEYPIQA GDLKYRDLNN DGIIDNNDRG PIGRPNLANT VLGLTLAANY KGFSVSLLFQ GAFGYSFSVV GTGIETFQSQ FQPIHQERWT PENADNAQFP RLTSNPTTVN SARTYMSDFW LIDARYVRLK TIDLGYQLPS RWLPQRLNNA RLYLSAYNLL TWTNYDKYQQ DPEVSSNSAG DAYINQRVVN LGVQIGFK
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