| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4802 |
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| Symbol | |
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| ID | 8360978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5991253 |
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| End bp | 5992449 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644966952 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003124437 |
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| Protein GI | 256423784 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0000012488 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTAATC ATATGAAGGC CGGGAGACAG GCATCTCCCG GCACTGGGGG CGCTTTGTGC
CTTACAGGCA TGTATATTAT TCCTGCTGCG CTTTCACTCC TGTTGCTCGG TGCCTGCGGG
CAAACCGAAA GTGGATATGC GAATAACGGT CCGCAGGAAT TTCCTATTTA TACCATTCAG
CAGGCGCCAA CCACACTTAA AGTGCAATAT CCGGCCTCTC TGGAAGGACA GCAGAATATC
GAGATCAGAC CTAAGATCGA TGGTTATATC CGGGAGATAT TAGTCGATGA AGGGGCTGTT
GTTAAAAAAG GACAGCTGCT TTTTGTGATT GATGCACCCC AATATGAACA GGAGGTAAGA
ACCGCTACCG CCGCTATTCA AAGTGCAGAA GCGGAGGTTA GTGCTGCAAA GTTACAGGTG
AGCAATCTGA CGCCACTGGT AAAGAAAGAG ATCATTACTG CCACCGCACT GGAAGCTGCG
CAATACAATC TGGAAGCGAA AGAGGCCGTG CTTTCACAGG CAAGGGCAGG TCTGGCGAAT
GCCCATACCA ATATCGGTTA TACGCGTATT GTGAGTCCGG TAGATGGTAT CGTTGGCGCT
ATTCCTAATA AGATAGGTAG TCTGGTAAGT CCTTCGGCTC CGCAGGCGCT GACAATGGTA
TCGAATATCC GCAATATTTA CGCTTACTTT TCTTTTGATG AAAAAGAGTT CCTGGCGTTT
ACGGCTAAAT ATAAAGGGCA GTCCGTCCAC GAGAAACTGC AACAAATGCC TCCGGTAAGT
CTGGTGCTTC CTGATGGGAC GCATTACCCG GAACAGGGTC GTGTAGAGAC CGTGAATGGT
ATGATTGACA GATCAACGGG CGCTATCAGT TTCCGGGCAA CGTTCCCAAA CCCGGCCGGC
ATTATCCGTA GTGGTGGCAG TGCTACCCTG GAAATTCCGA TGAATCTTTC CTCCGCATTG
CTGCTGCCAC AGCAGGCTAC TTTTGAAATG CAGGGTATGA AAATGGTGTA TGTCGTGTCG
GCTGACGGTA TGGTAAAAAG TCGTGAGGTA CATGTGATGG ACATCGGCAC GAGTGACAGC
TATGTAGTCG AAAGCGGATT ACAGGCAGGT GATAAGGTAG TCGCCGAAGG TATGGGTAAT
CTGAAGGATA GTCTGCTGAT CAAACCTGTG CCGGCAAAAC CACTCGCACA GCAATAA
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| Protein sequence | MTNHMKAGRQ ASPGTGGALC LTGMYIIPAA LSLLLLGACG QTESGYANNG PQEFPIYTIQ
QAPTTLKVQY PASLEGQQNI EIRPKIDGYI REILVDEGAV VKKGQLLFVI DAPQYEQEVR
TATAAIQSAE AEVSAAKLQV SNLTPLVKKE IITATALEAA QYNLEAKEAV LSQARAGLAN
AHTNIGYTRI VSPVDGIVGA IPNKIGSLVS PSAPQALTMV SNIRNIYAYF SFDEKEFLAF
TAKYKGQSVH EKLQQMPPVS LVLPDGTHYP EQGRVETVNG MIDRSTGAIS FRATFPNPAG
IIRSGGSATL EIPMNLSSAL LLPQQATFEM QGMKMVYVVS ADGMVKSREV HVMDIGTSDS
YVVESGLQAG DKVVAEGMGN LKDSLLIKPV PAKPLAQQ
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