| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4800 |
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| Symbol | |
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| ID | 8360976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5986597 |
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| End bp | 5987982 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644966950 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003124435 |
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| Protein GI | 256423782 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.130078 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.00028633 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAGAA GATATTTATT GCTGCTGCCT TGTGTAACGG TAGTGGCAGC CTGTAAGGTA
ACTAAAACAT ATCAGCCGCC GGCTACAGAT ACGGTGGCGC AATATAGAGG GCAGTCTTTG
TCCGATACCA TGAATATTGC CCGCTTACCC TGGCGCTCTT ATTTCCAGGA TGAAGATCTC
CAGGCGCTGA TTGCTGAAGG TCTGGGCAAG AACCTGCAGC TGAAGGCAGC CATTACACGT
ATTGAAGCGG CCAATGTTGC TTATCAGCAA AGTAAGGCGG CCTTCCTGCC CCAGGCCGGG
TTTAATGCCG GTTATAAGCA ATCCCGCCTG GCTTATCCGC AGGGATTCGG ATTTGTCACC
ACAACACCGC AGTATGATAT GAGTCTGAGT GCTTCCTGGG AAGCGGATAT CTGGGGCCGC
TTACGTAGCG CTAAAAAAGC AGCCTATATT TCGCTGCTTT CCGGAGAGGC GGCAAGGGAT
GTTATACTCA CCCGCCTGAT TGCCGATATC GCGGGGCATT ATTATACGCT GCTGGTACTG
GATCATCAGT TGACGATCCT GGAAAAGGCG GCGGACATAA GAAGTGCGGA CGTAGAAGCG
ATGACCGAAT TGCAGCGGTC AAATGTGGTG AATGGTGCTG CGGTGGTACA GAGTCAGGCG
AACGAATACG CCGCACGGGT AGCTATTCCG GTATTGAAAA AGCAGATCCG GCAAACAGAG
AACGCCCTGA GTATTTTACT GGGTAAGCCG GCTGGCGATA TAAAAAGAGG ACGGCTGGAA
GATCAGCTGA TGCCTGTGAT GATCAACAGC GGCGTGCCAG CACAGCTGCT GGCAAATCGT
CCGGATGTAC GTCAGGCAGA ACTGGCCTTC AGAGGGGCTT TCGAATCAAC CAATATCGCC
CGGACGGCCT TCTATCCCTC ACTGACGCTG ACGGCAGCCG GAGGTTTCAG CAGTTTTAGT
TTCGGAGATT GGCTTACAAA GAATACAGGT TTGTTTGGTA ATGTGGCAGC CGGGGTATTC
CAGCCGATCT ACAATCGCGG TCAGAATAAA TCCAGGCTGA AGGTCGCCAA GGCGGAACAG
CAGACTGCCT TTTACAATTT TCAGCAGTCT TTGCTGACGG CAGGGCAGGA GGTGTCTGAT
GCCTTGTTTA CTTATTCATC CGTAGAAGAA CGTAAGGCGT TTCGTAGCAA ACAGATCGAG
GCATTGGAAA AGTCGGTTGA TTTTACGCAA ACGCTTTTAA AATATAGCAG CAACACGAAC
TACATCGACG TGCTGACTTC AGAACAGAGC CTTTTATCGG CCCAACTGGA GCAGGCCAAT
GATCAGCTGG AGCAATGGAT GGCGGTGATC AGCCTCTATC ATGCACTGGG CGGTGGTTGG
CAGTAA
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| Protein sequence | MKRRYLLLLP CVTVVAACKV TKTYQPPATD TVAQYRGQSL SDTMNIARLP WRSYFQDEDL
QALIAEGLGK NLQLKAAITR IEAANVAYQQ SKAAFLPQAG FNAGYKQSRL AYPQGFGFVT
TTPQYDMSLS ASWEADIWGR LRSAKKAAYI SLLSGEAARD VILTRLIADI AGHYYTLLVL
DHQLTILEKA ADIRSADVEA MTELQRSNVV NGAAVVQSQA NEYAARVAIP VLKKQIRQTE
NALSILLGKP AGDIKRGRLE DQLMPVMINS GVPAQLLANR PDVRQAELAF RGAFESTNIA
RTAFYPSLTL TAAGGFSSFS FGDWLTKNTG LFGNVAAGVF QPIYNRGQNK SRLKVAKAEQ
QTAFYNFQQS LLTAGQEVSD ALFTYSSVEE RKAFRSKQIE ALEKSVDFTQ TLLKYSSNTN
YIDVLTSEQS LLSAQLEQAN DQLEQWMAVI SLYHALGGGW Q
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