| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4766 |
|---|
| Symbol | |
|---|
| ID | 8360942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5942981 |
|---|
| End bp | 5944912 |
|---|
| Gene Length | 1932 bp |
|---|
| Protein Length | 643 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644966917 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_003124402 |
|---|
| Protein GI | 256423749 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0559289 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.121979 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAGA GATCATGGAT TACCCCGTCC TGGCTGATTT TGTTATTAGA CCTCGGGTGT
TCGATTGTTG CAATGAGCTT ATCTTTTTTA CTAAGGCTTA ACTTCAACCT CGAAGACTTT
GGTCGATACC CCATGCAGGA TATTGTTATT GTGGTTGTGA GTGTGAACTT ATTACTGTCA
CTACTGTTTC GTACATACAC CGGTATCGTA CGTTATACAA GTATGGCTGA TATAGGCCGC
ATCTCATGTG TAAGCCTTAT CAGCGCTGTG ATATATTATT ATATCAACGT CGCTGCGCTC
GCCTACACAA CGGAAAACAT GTTCCCGCTC TCTGTCATTG CTATCAACTT CTTCATCAAT
ACTTGTTTCC TCCTTTCTTA CAGACTATTT GTTAAATGGG CTTTCCGCTA CTATAGCAGA
TACGGCGTCA TTAATAAAAC AAAGGCAGTA ATATACAATG CAGGACACTC CGGTCTCGTC
GTACGTAAAG CCATTCACGA AGACCAGACA GGTAGTATAC GCGTCGCTGG ATTCCTGGAT
GATAAATTAA CCCGCGCGGG CAAACGCCTG GATGGATTGC CCATCTATGC TACCTCCAGA
AGATCTCTTG AAAAACTCGT CAAACAAGAG AAAGTTAAAC TGCTTATCGT TGCTGATGAA
ACGCCCGACA CGCAGATACT GAACGAACTC GTTGACAATT GCTTTGCCTT AAATATAAAA
GTACAAAAGG TCCTGCCAGT CAATAAATGG ATCAATGCAG GCTGGAGCCC GGCCAAACTT
CAGGATATTA AAATCGAAGA CCTGCTCGAC AGATCAGTCA TCAATATTAA TAATGAACAG
GTGTCACGGG AGAATAAAGG TAAATCCATA CTCGTAACCG GCGCCGCTGG TTCTATCGGT
AGCGAACTTG TAAGACAACT CGCCAAACTG GAGCCTTCCG TTATTCTGCT CTGCGATAAG
GCAGAATCAC CACTCCACGA ACTTGAACTG GAAATGGCAG AACTGTCCCC CGCAACTACC
ATCGTACCTT ACATTGCCAA TATATGCGAC AGAACACGTA TGCAGCAATT GTTTGAAGTA
TACGAACCCT CCGTCGTCTA TCACGCCGCC GCCTATAAAC ATGTGCCAAT GATGGAGAAG
AATCCCTCCG TAGCTGTGTT GAACAACGTA CTAGGCACCA AGATGCTCGC CGAGTTATCG
GTGGAGTTTG GCGTGGAAAA ATTTGTGATG ATCTCTACCG ATAAAGCCGT GAATCCCACC
AACGTGATGG GCGCCTCCAA AAGAATCGCA GAGATCTTCA CCCAATCTTA TAATACACAC
GTCAATCGTC AATATAAAAA ATCCGCATCC GGTTATAATC CTGCACCCAC CCGGTTTATC
ACCACCCGGT TCGGAAATGT GCTGGGTTCA AACGGCTCCG TGATCCCCCG CTTCAAACAC
CAGTTGGAGA AAGGAGGTCC GCTGACAGTT ACCCATCCGG ATATCACCCG TTACTTCATG
ACCATACCCG AAGCTTGTCA GCTGGTGCTG GAAGCAGGAG CCATGGGACA GGGAGGGGAG
ATCTTTGTCT TCGACATGGG ACAACCGGTG AAGATCGCCG AACTGGCGTG TAAAATGATC
CGCATGAGCG GCAGAGAACC TGGCATAGAC ATACAGATTG TCTATACGGG TCTGCGGCCC
GGTGAGAAAC TGTATGAAGA ACTGCTGAAT ACAGCAGAAA ATACACTGAG TACCTACCAT
GAAAAGATAC TGATAGCAAG GGTCCGTGAA TATGATTTTG TTGAGGTAAA CGACCATATT
GAAAAACTGA TCGCTTCTGC CCAGAAGCAC TACATCACCC CAACCGTTGT GTTGATGAAA
CAATTGGTGC CGGAATTCAT TAGTAAAAAT TCTGCGTACG AACAGTTGGA CAAGGATATA
ATCAAGTTGT AA
|
|---|
| Protein sequence | MTKRSWITPS WLILLLDLGC SIVAMSLSFL LRLNFNLEDF GRYPMQDIVI VVVSVNLLLS
LLFRTYTGIV RYTSMADIGR ISCVSLISAV IYYYINVAAL AYTTENMFPL SVIAINFFIN
TCFLLSYRLF VKWAFRYYSR YGVINKTKAV IYNAGHSGLV VRKAIHEDQT GSIRVAGFLD
DKLTRAGKRL DGLPIYATSR RSLEKLVKQE KVKLLIVADE TPDTQILNEL VDNCFALNIK
VQKVLPVNKW INAGWSPAKL QDIKIEDLLD RSVININNEQ VSRENKGKSI LVTGAAGSIG
SELVRQLAKL EPSVILLCDK AESPLHELEL EMAELSPATT IVPYIANICD RTRMQQLFEV
YEPSVVYHAA AYKHVPMMEK NPSVAVLNNV LGTKMLAELS VEFGVEKFVM ISTDKAVNPT
NVMGASKRIA EIFTQSYNTH VNRQYKKSAS GYNPAPTRFI TTRFGNVLGS NGSVIPRFKH
QLEKGGPLTV THPDITRYFM TIPEACQLVL EAGAMGQGGE IFVFDMGQPV KIAELACKMI
RMSGREPGID IQIVYTGLRP GEKLYEELLN TAENTLSTYH EKILIARVRE YDFVEVNDHI
EKLIASAQKH YITPTVVLMK QLVPEFISKN SAYEQLDKDI IKL
|
|---|
| |