| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4763 |
|---|
| Symbol | |
|---|
| ID | 8360939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5938132 |
|---|
| End bp | 5939460 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644966914 |
|---|
| Product | nucleotide sugar dehydrogenase |
|---|
| Protein accession | YP_003124399 |
|---|
| Protein GI | 256423746 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0677] UDP-N-acetyl-D-mannosaminuronate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000048772 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.305749 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCAT CAGGGATAAA TACTAACGAA CAGAAGACGG TAGCCAACGC CAGTATAGCC
ATCATTGGCC TGGGGTATGT CGGTTTGCCC CTGGCGATCG AATTTGCGAA AAAGTACCGT
ACACTCGGTT TTGATATCAA TGAAGTGAGA GTAAGAGAGC TGACCGTAGG TAAAGACAGG
ACAAGAGAAG CCAACATAGA GGAACTGAAA AGGGTGACCG CAGCCGCTGC CGGAACATCG
GGTACAGGAC TGACACTGTC TTCTGTAAAG AATGACTTGC AGACCTGCAA TATATTCATC
GTCACCGTAC CGACGCCGAT AGATGATTTT AAAGCGCCGG ATCTTGGACC GCTGTTAAAA
GCTTCTGAAA TGCTGGGCAG TGTGCTTAAA GCGGGTGATA TCGTGATTTA TGAGTCCACT
GTATACCCGG GTTGCACAGA AGAGGATTGT GTGCCGGTGC TGGAGAAAAC CTCCGGACTG
ACATTCAACA AAGACTTCTT CGCCGGTTAT TCTCCCGAAA GGATTAATCC GGGCGACAAG
GTCAATACCC TGACCCGCAT CAAAAAAGTG ACCAGCGGGT CTACGCCGGA AATCGCAGAA
AAAGTAGATG CATTGTATCG CTCCATCATT GAAGCCGGCA CGCACAAGGC GTCCTCCATC
AAAGTGGCGG AGGCATCCAA AGCCATCGAA AATGCGCAGC GTGACGTCAA TATCTCTTTT
GTCAACGAAC TGGCACTCAT CTTCGACCGT ATCGGGATCG ACACCAACGA TGTCATCGAA
GCGGCAGGTA CAAAATGGAA CTTCCTTAAA TATAAACCCG GACTGGTAGG TGGTCACTGC
ATCGGCGTTG ATCCTTACTA CCTGGCGCAT AAAGCACAGG CACTGGGCTA TCATCCGCAG
GTAATCCTGT CAGGCCGCAG GGTGAACGAC AACGTCGGGA ATTTTGTGGC CAATAAGGTG
GTGAAGCTGA TGATTGAGAA AGACCATAAA ATCAAAGGCT CCCGGGCACT GATCATGGGA
ATCACCTTTA AGGAGAATTG TCCGGATGTA CGCAATACCC GCGTAGTTGA TATCTACGAA
GAACTGAAAC AGTTCGGCCT CGAAGTAGAT ATCTACGATC CCTGGGCAGA TGTGGAGGAA
GTTAGAAACG TATATGAAGT GGAAGTGCAG AACGAACTGG ATCAGACGGT GAGCTATGAC
GCCATCATCG TAGCCGTTGC ACATGATGAG TTCCTGACAC TGGACTATGG GAAGATCAAA
AGCGATAATG CCGTCATTTT CGATACGCGC TCCTGCCTGG ACAGAAACCT GGTAGACGCC
AGGCTATAA
|
|---|
| Protein sequence | MSSSGINTNE QKTVANASIA IIGLGYVGLP LAIEFAKKYR TLGFDINEVR VRELTVGKDR
TREANIEELK RVTAAAAGTS GTGLTLSSVK NDLQTCNIFI VTVPTPIDDF KAPDLGPLLK
ASEMLGSVLK AGDIVIYEST VYPGCTEEDC VPVLEKTSGL TFNKDFFAGY SPERINPGDK
VNTLTRIKKV TSGSTPEIAE KVDALYRSII EAGTHKASSI KVAEASKAIE NAQRDVNISF
VNELALIFDR IGIDTNDVIE AAGTKWNFLK YKPGLVGGHC IGVDPYYLAH KAQALGYHPQ
VILSGRRVND NVGNFVANKV VKLMIEKDHK IKGSRALIMG ITFKENCPDV RNTRVVDIYE
ELKQFGLEVD IYDPWADVEE VRNVYEVEVQ NELDQTVSYD AIIVAVAHDE FLTLDYGKIK
SDNAVIFDTR SCLDRNLVDA RL
|
|---|
| |