Gene Cpin_4740 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4740 
Symbol 
ID8360916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5914599 
End bp5915366 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content45% 
IMG OID644966892 
Productputative secreted glycosyl hydrolase 
Protein accessionYP_003124377 
Protein GI256423724 
COG category[S] Function unknown 
COG ID[COG3828] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.195293 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.002769 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTACCTGC GTTCTTTTCT CTCCATTCCC GTTATTATAA TCCTTGGTTC TTTACTGGCA 
TTACAACCTG CAAAACCCCG TTTCCGCGTA TTAGCACTGT CGGAAAACGG TGGTCATCAT
CTTGCATATT CTAAAGCGGC GAAAGTCTGG CTGGACAAAC TGGCGGCTGA CAGCAATTTC
GCGATCGATT ACATTGAAAA CACAGACAAA ATAGATAGTG CGTATTTGTC TAATTATCAG
TTGTTTATTC AACTGGATTA TCCCCCGTAT GCCTGGAAGG AACCGGCGGT AAAGGCATTT
GAGCAGTATG TGAACGAGGG GAGGGGTGGA TGGATCGGGT TTCACCATGC GACTTTGCTG
GGTGAATTTG ACGGTTATGG TCTGTGGAAC TGGTTTTACC AGTTTATGGG GCAGATTCGT
TTCAAAGATT ATATAGCAAA CTTTGCGGCG GGCGACGTAC ATGTAGAAGA CGCTTCCCAT
CCTGTATTTA AGGGTGTTCC CCCGGTTTTT AATGTAAAAA CGGAGGAGTG GTATATTTAC
GACCGGGATC CGCGTCCGAA CGTACATGTA TTGGCGAACG TCGATGAGCA TTCTTATGTG
CCGGCATCGT CAAAAACAAT GGGCGATCAT CCGGTTATCT GGACTAACCC GGCTTATAAG
GCGAGGAATA TCTACATTTT TATGGGTCAT TCTCCCGATC TTTTTGAGAA TATAGCTTAC
AAGACCCTCT TCAGAAATGC CATTTTTTGG GCTGTAAAGA AAAAATAG
 
Protein sequence
MYLRSFLSIP VIIILGSLLA LQPAKPRFRV LALSENGGHH LAYSKAAKVW LDKLAADSNF 
AIDYIENTDK IDSAYLSNYQ LFIQLDYPPY AWKEPAVKAF EQYVNEGRGG WIGFHHATLL
GEFDGYGLWN WFYQFMGQIR FKDYIANFAA GDVHVEDASH PVFKGVPPVF NVKTEEWYIY
DRDPRPNVHV LANVDEHSYV PASSKTMGDH PVIWTNPAYK ARNIYIFMGH SPDLFENIAY
KTLFRNAIFW AVKKK