Gene Cpin_4737 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4737 
Symbol 
ID8360913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5911077 
End bp5912624 
Gene Length1548 bp 
Protein Length515 aa 
Translation table11 
GC content50% 
IMG OID644966889 
Productsigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_003124374 
Protein GI256423721 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0920124 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000878873 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATTTGT TAGCGTTGAT AGAACTGTTA TTACCGGAAG GGACATTGCC GGAAATACAG 
TCTGAGAATG GACATGTAGA CTGGAGAGGA GCAATCGGGT CGATCAGGAA TGAAAATGAT
CTTTTTGCAT TTATTCATAC TGTGTTGCGT CCTTACCTGC ATACGATCTC TGTATTGATT
GGTATCGCTG ACGGAAATGG GACGATCAGT CGCTGGTGCC ACAAAACAGA GGGGTTAACC
TTACTGCCGC TACCTCAGAA GGTAAGCGAG CATTTTATGC AGGACAATAT TTCAGGGGTA
CTGGAGATGT ATGCGCCTGA CAGAAGGTCA GCTTTACAGA CGACTCTTTT CAATAGTGGG
GTGCGGGAGA TGCTGATACT GCCTTTGCGT AACCATACCA ATAGCTTTGG TTTTTTATGT
CTGCTGGCTA AACATCATAA TACCTTCCCC AAATCATTGC AGATCTCCGT GAAACGTTAC
GCCGGACTGC TTTCTGCCGC CACCCTGAAA CTGATGTTGC TGGACGCCTT GCCGCAATGG
TTGCAGGAGG AGGATATGGG CGGTGACGGC GCTGAACTGC TATTGTATAA TGATCTGCTG
CCGGCGAAGC TGGTCAGTGG GATCGCTTTA CGTCCGGTGA TACAACAGGT CAGGCAGGTC
GCGCCTACAG ATGCGACGGT GCTGCTGACC GGAGAAACGG GCACTGGTAA GGAGCTATTT
GCAGAGGCCA TCCACCTTTC TTCTATGCGC AGGCAGAAAG CCTTCGTCAA AATCAATTGT
GCCGCATTGC CACCCCAGCT CATAGAGTCG GAGTTGTTCG GTCATGAGAA AGGGGCATTT
ACAGGCGCTA TTCACCGCCG TATCGGCAAA TTTGAGATGG CGGAAGGCGG TACCCTTTTC
CTCGATGAAA TCGGCGAATT ACCCCTTGAT ATGCAGGCGA AACTACTGCG TGTGATCCAG
GAGAAGGAAA TTGAACGTAT CGGAGGGACG GAGACCATTC CCGTCAATGT GCGTATTATT
GCGGCCACCA ACAGGACATT GGAAGAAGAA GTGAGACAGG GGCGTTTCCG TCAGGACCTG
TATTACCGTT TATACGTATT TCCCATACAC CTGCCGGCCC TGCGGGAGCG CAGGGAAGAC
ATTCCATTGT TGTTACAGCA TTTTGCCCGC AATGCCGCTA TGAAGTATGG AAAACCCATA
CGGCATATTG CATCCGGATC CGTGCTGGCA CTGATGGATT ATACCTGGCC GGGAAATATC
CGGGAAATGG AACACATGGT AGAACGCGCA GTTATTTCAA GTGACGAACC ACAGATTACC
ATCGCTGTTC CCGGAAACCG AAAAGCATTG GAGGCAGATG GTAATAGTCT GTCGCCGTTG
CTTACGCTGG CGGAAACAGA ACGGCAGACC ATTATCAGGG CGCTTCGTTA TTCCAATGGC
AGGATCAGAG GTCCGCAGGG CGCTGCAGAT CTTCTGGATA TCAAACCTAC CACGCTGGAA
GCGCGGATGA AAAAGCTGGG TATTGTGAAG GAACATGTTG TGCGCTAA
 
Protein sequence
MDLLALIELL LPEGTLPEIQ SENGHVDWRG AIGSIRNEND LFAFIHTVLR PYLHTISVLI 
GIADGNGTIS RWCHKTEGLT LLPLPQKVSE HFMQDNISGV LEMYAPDRRS ALQTTLFNSG
VREMLILPLR NHTNSFGFLC LLAKHHNTFP KSLQISVKRY AGLLSAATLK LMLLDALPQW
LQEEDMGGDG AELLLYNDLL PAKLVSGIAL RPVIQQVRQV APTDATVLLT GETGTGKELF
AEAIHLSSMR RQKAFVKINC AALPPQLIES ELFGHEKGAF TGAIHRRIGK FEMAEGGTLF
LDEIGELPLD MQAKLLRVIQ EKEIERIGGT ETIPVNVRII AATNRTLEEE VRQGRFRQDL
YYRLYVFPIH LPALRERRED IPLLLQHFAR NAAMKYGKPI RHIASGSVLA LMDYTWPGNI
REMEHMVERA VISSDEPQIT IAVPGNRKAL EADGNSLSPL LTLAETERQT IIRALRYSNG
RIRGPQGAAD LLDIKPTTLE ARMKKLGIVK EHVVR