| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4731 |
|---|
| Symbol | |
|---|
| ID | 8360907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5905896 |
|---|
| End bp | 5906411 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644966883 |
|---|
| Product | isopentenyl-diphosphate delta-isomerase, type 1 |
|---|
| Protein accession | YP_003124368 |
|---|
| Protein GI | 256423715 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1443] Isopentenyldiphosphate isomerase |
|---|
| TIGRFAM ID | [TIGR02150] isopentenyl-diphosphate delta-isomerase, type 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.291133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0000344266 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAC AGGTAATATT GGTGAATGAA CGCGACGAGG AGACAGGATT GATGGAAAAA
ATGGAAGCAC ACGAGAAAGG CCTGCTCCAC AGAGCTTTTT CCGTGTTTAT TATGAATGAT
CAGGGCGAAA TGCTGTTACA ACAGCGGGCG CTCGATAAAT ATCATTCCGG CGGTTTATGG
ACGAACGCCT GCTGTAGCCA CCCCTTACCG GGTGAAACAG TGGAAGCGGC CACTCATCGC
CGTCTTTCGG AAGAAATGGG ATTTGACTGT CCCTTGCGTG AGCTATTCCA GTTTACTTAC
CGTACAGAAT TTGACAATGG TCTGATTGAG CATGAGTACG ACCATGTATG GGTGGGTGTC
TATAACGGAG CGATCAACCC GGATCCAGGG GAGGTACATG CGTTTCATTA TTTACCGGTA
GAAGAAATTG ACCGGCAGCT AACAGCAAAC CCTCAGCAGT TCACCAGCTG GTTCAGGCTG
GCCTTTTCCA GAGTTATAGA CAAATTAAGG GAATGA
|
|---|
| Protein sequence | MKAQVILVNE RDEETGLMEK MEAHEKGLLH RAFSVFIMND QGEMLLQQRA LDKYHSGGLW
TNACCSHPLP GETVEAATHR RLSEEMGFDC PLRELFQFTY RTEFDNGLIE HEYDHVWVGV
YNGAINPDPG EVHAFHYLPV EEIDRQLTAN PQQFTSWFRL AFSRVIDKLR E
|
|---|
| |