Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4720 |
Symbol | |
ID | 8360896 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 5888849 |
End bp | 5891089 |
Gene Length | 2241 bp |
Protein Length | 746 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644966873 |
Product | protein of unknown function DUF893 YccS/YhfK |
Protein accession | YP_003124358 |
Protein GI | 256423705 |
COG category | [S] Function unknown |
COG ID | [COG1289] Predicted membrane protein |
TIGRFAM ID | [TIGR01666] hypothetical membrane protein, TIGR01666 [TIGR01667] integral membrane protein, YccS/YhfK family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0171257 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.00604484 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGGCATT GGATTCAGGA AGTCAGGAAT TTCATCTATA GTTATCATTT CAGTACCGGT TTACGTACGA CCATTAGTGT GGTAGTGCCT TCTATCGTAT TTTCCATGAT GGGCGACCTG CCAATGGGTA TAGTAGCCTC GCTGGGCGCG TTGGCTACGG CCCTGTCAGA CGTACCTGGT ACCGCGTTGC ATAAACGCAA TGGCATTCTG ACTGCCATCG CCTTTATCTT CCTGACCGCC CTGGGCACTT CTCTGATCTC ACCCTACCCA TTATTGATGA CCGGCTGGAT ACTGGCCTGT TGTTTTGCCA ATGGGATGCT GCTGGTCTAC GGTAACCGTG GCGGCAACAT CGGCATCGCC TGTATGCTGG TAATGGTTTC TATCCTCGGT GAAAACCCCG TAGGACCAGC AGAAGCCTTC CTGCACTGCC TGGTCATTCT GGGTGGCAGC ATCTGGTACG GCTTCCTCGC CCTCCTGCTC TGGCAGATAC GGCCCTACCT CAGCGTACAG CAGACCCTTG CGGAATGTAT CATGGAAACG GCCCACTACC TTGAAGAAAG AGCCGGCTTC TATGCCAAAG ACGCTCATAA GAACTTTGAC GAGATCTATA AGTCCGTACT GGCTCAGCAG GTGATCGTCA GTGAAAAGCA GGAAGCCGTA CGCGAACTGC TGCTCAAACG CCGTTCCGCT CAGCAAGGCT CTACCAGTAT CAATAAAAGC ATGGTGCTGA TCTTTATGGA TATTGTGGAC CTCCAGGAAC AGATTATGGC CTCCCAGACC GACTATCTGG CCCTCCACAA TGATTTTGGC AGTATGGATA TCCTGGAAAA ATTCCATACG CTGATCCAGG AGTTTACCGG CGAACTGGAG CTGATTGCCA CAGCGGTGGC CGCCGGACAA AGATCCCTTC CCCGTGCTAA CCTTCGTCAT GAAATAGATA AGGTACAACA TGCCATAGCC GATATCCGTA AAACGATGCC GACCCTGAAA GAGCGTACCA AACTGCTTAC GCTCACCAAT ATCCTGCACA ACCTGCAGGA CATGACACAG CGTATATATA ACCTGCACCG CCTCACCAGA CTGGAAAGGG TAAAAGACGA AGTGATCGAT CCCCGTTTAC AACTGGCCAG CTTTACCACC CGCAACCGCT ACGACGTAGA ACCGCTGGTA AACAACCTGA CCTTTGAATC GCATATCTTC CGTCACGCAT TACGTGTCAG CATCGCTGCC GTCACCGGCT ATTTACTTGG ACAGGTATTC CACCTGGACA GGGTATACTG GATACTGCTG ACCATCGTCG TCATCCTGAA ACCGGGTTTC GGTATCAGTA AGGCCAGAAG CTATCAGCGT ATTATCGGCA CGATCACCGG CGCACTTTTT GCCGCCGCCG TATTATACCT CACGGCCAAT ACTACCGTCA TTTTTATCCT GATGCTGATC TGTATCCTTG GAGCTTATAG TTTTATGACC CAGCAGTATA CGCTCAGTGT CTTCTTTGTA ACACCATTTG TCATATTCCT TTTGCATTTC CTGCACCCTG CGCACCTGCA GAATGCTGAA CTGCGTGTAC TGGATACCTT CATCGGCGTC AGCATCGCCT TCCTGGCCAG TTTACTGTTG TGGCCCAGCT GGGAACACAA CTATCTGCCC AGTCACATGA GCAAGATGGT AAAAGATAAT GCCCGTTACC TGGATCATGT AATGCGCCTG TATACCGACA GGGAGTTTGT AATGAACGAT TATAAACTGG CGAGAAAAGA CACCAACGTC AGTGCCGCTA ACCTTATGTC AGCCTTTCAG CGTATGCTCT CAGAACCTAA AAGCAAACAG ATACATGGTT CTGAAGTTTA TCATTTTGTG GTGCTGAACC ACTCCCTGAT GTCGCACATT GCGGCGATGG CCAACTATGG GATGCTGCAT GGGGTACATT ATCCTAAACC GGAATATAAA CTGCTCAATA ATTATCTGCA GCAGCATTTC AGCTGTATTG TCGGTTTGAT AGATGATCCG GCAACAAAAA CTACACCGCC GCCGACCAAT ATGGAGGCAT TGGAAACGCT GGATATTGAA CTGGAAAAGC TGTATCAGCT CAGACAACAG GAGATCAATG ATGGCAAAGG AGAAACCCCT GTGAGGGAAG ATATGCTGGA AACGAAGATG GTCCGCGATC AGTTAAATGC GATGTTCTCG CTGCTGAAAG ACATGAAGAA AACGATTGAT AAAACAATTA AACATCCATA G
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Protein sequence | MRHWIQEVRN FIYSYHFSTG LRTTISVVVP SIVFSMMGDL PMGIVASLGA LATALSDVPG TALHKRNGIL TAIAFIFLTA LGTSLISPYP LLMTGWILAC CFANGMLLVY GNRGGNIGIA CMLVMVSILG ENPVGPAEAF LHCLVILGGS IWYGFLALLL WQIRPYLSVQ QTLAECIMET AHYLEERAGF YAKDAHKNFD EIYKSVLAQQ VIVSEKQEAV RELLLKRRSA QQGSTSINKS MVLIFMDIVD LQEQIMASQT DYLALHNDFG SMDILEKFHT LIQEFTGELE LIATAVAAGQ RSLPRANLRH EIDKVQHAIA DIRKTMPTLK ERTKLLTLTN ILHNLQDMTQ RIYNLHRLTR LERVKDEVID PRLQLASFTT RNRYDVEPLV NNLTFESHIF RHALRVSIAA VTGYLLGQVF HLDRVYWILL TIVVILKPGF GISKARSYQR IIGTITGALF AAAVLYLTAN TTVIFILMLI CILGAYSFMT QQYTLSVFFV TPFVIFLLHF LHPAHLQNAE LRVLDTFIGV SIAFLASLLL WPSWEHNYLP SHMSKMVKDN ARYLDHVMRL YTDREFVMND YKLARKDTNV SAANLMSAFQ RMLSEPKSKQ IHGSEVYHFV VLNHSLMSHI AAMANYGMLH GVHYPKPEYK LLNNYLQQHF SCIVGLIDDP ATKTTPPPTN MEALETLDIE LEKLYQLRQQ EINDGKGETP VREDMLETKM VRDQLNAMFS LLKDMKKTID KTIKHP
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