Gene Cpin_4701 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4701 
Symbol 
ID8360877 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5858146 
End bp5859039 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content47% 
IMG OID644966854 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003124339 
Protein GI256423686 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0913781 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.069662 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAGA TGGAATCACT GGAAGGTTTT TACCAGGATA AATTCAATCG CCCGCCTGAG 
GGATTGAAGC ATGACAACAT GCACTTCAAT CTCTTCAGTT TTGATGATTG CGAAGGAACC
GCCACTATCA AATACCGTCG TCGTGATTTC TATAAGGTAA CGCTCTCATG GGGCAGGAAT
ATCCTGCATT ACGGAGATAC CAGTCTGGAA GTCAATGGTC CGGCGCTCGC TTTTTTCAGT
CCGGACGTAC CCTATACCAT CGATCTGCCG GATGGTATGA TGATGGGCGA CTATTTCATC
TTTACCGAAG CCTATTTCAA TGCGCAATAT CGCAACAGTA TCCGCGAACT GCCCGTATTT
GCAGCAGGGG CGCGGCCCGT ATTCCTGTTG AATAAGACAC AGGAGAAGAC GGCTAGGGGC
ATTTTTAAGA AGATGAAACA GGAGCTGGCA ACGGATTATG AGTTTAAGCA CGACCTTATC
CGGAACTATA TCGTTGAGCT GATCCATTTT GCCCTGAAAC TGAAACCTGT TGATACGGTG
TATCAGCAGA TGGATGCCAA TACGCGTATT ACAGCGGTCT TTAATGAATT GCTGGACCGG
CAGTTTCCCA TAGAGTCCCT GGCACAACGT TTTGAACTAC GCTCTGCGCG TGACTTTGCA
GATCGCCTGG CGGTACATGT CAATCACCTG AACTATGCCT TGAAACATAC AACAGGGAAG
ACCACCACAG CACATATCCT CAACCGCCTG GCCAGTGAAG CCATGGTGTT ACTCAAACAT
ACTGACTGGA GTATCTCTGA GATCAGCTAT ACGCTGGGTT TTGAAGATGC TGCACACTTT
ACGCACTTCT TTAAGAAACA CACGAATCAG ACGCCTACTG CATACAGAAG CTAA
 
Protein sequence
MEKMESLEGF YQDKFNRPPE GLKHDNMHFN LFSFDDCEGT ATIKYRRRDF YKVTLSWGRN 
ILHYGDTSLE VNGPALAFFS PDVPYTIDLP DGMMMGDYFI FTEAYFNAQY RNSIRELPVF
AAGARPVFLL NKTQEKTARG IFKKMKQELA TDYEFKHDLI RNYIVELIHF ALKLKPVDTV
YQQMDANTRI TAVFNELLDR QFPIESLAQR FELRSARDFA DRLAVHVNHL NYALKHTTGK
TTTAHILNRL ASEAMVLLKH TDWSISEISY TLGFEDAAHF THFFKKHTNQ TPTAYRS