Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4701 |
Symbol | |
ID | 8360877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 5858146 |
End bp | 5859039 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644966854 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_003124339 |
Protein GI | 256423686 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0913781 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.069662 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAGA TGGAATCACT GGAAGGTTTT TACCAGGATA AATTCAATCG CCCGCCTGAG GGATTGAAGC ATGACAACAT GCACTTCAAT CTCTTCAGTT TTGATGATTG CGAAGGAACC GCCACTATCA AATACCGTCG TCGTGATTTC TATAAGGTAA CGCTCTCATG GGGCAGGAAT ATCCTGCATT ACGGAGATAC CAGTCTGGAA GTCAATGGTC CGGCGCTCGC TTTTTTCAGT CCGGACGTAC CCTATACCAT CGATCTGCCG GATGGTATGA TGATGGGCGA CTATTTCATC TTTACCGAAG CCTATTTCAA TGCGCAATAT CGCAACAGTA TCCGCGAACT GCCCGTATTT GCAGCAGGGG CGCGGCCCGT ATTCCTGTTG AATAAGACAC AGGAGAAGAC GGCTAGGGGC ATTTTTAAGA AGATGAAACA GGAGCTGGCA ACGGATTATG AGTTTAAGCA CGACCTTATC CGGAACTATA TCGTTGAGCT GATCCATTTT GCCCTGAAAC TGAAACCTGT TGATACGGTG TATCAGCAGA TGGATGCCAA TACGCGTATT ACAGCGGTCT TTAATGAATT GCTGGACCGG CAGTTTCCCA TAGAGTCCCT GGCACAACGT TTTGAACTAC GCTCTGCGCG TGACTTTGCA GATCGCCTGG CGGTACATGT CAATCACCTG AACTATGCCT TGAAACATAC AACAGGGAAG ACCACCACAG CACATATCCT CAACCGCCTG GCCAGTGAAG CCATGGTGTT ACTCAAACAT ACTGACTGGA GTATCTCTGA GATCAGCTAT ACGCTGGGTT TTGAAGATGC TGCACACTTT ACGCACTTCT TTAAGAAACA CACGAATCAG ACGCCTACTG CATACAGAAG CTAA
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Protein sequence | MEKMESLEGF YQDKFNRPPE GLKHDNMHFN LFSFDDCEGT ATIKYRRRDF YKVTLSWGRN ILHYGDTSLE VNGPALAFFS PDVPYTIDLP DGMMMGDYFI FTEAYFNAQY RNSIRELPVF AAGARPVFLL NKTQEKTARG IFKKMKQELA TDYEFKHDLI RNYIVELIHF ALKLKPVDTV YQQMDANTRI TAVFNELLDR QFPIESLAQR FELRSARDFA DRLAVHVNHL NYALKHTTGK TTTAHILNRL ASEAMVLLKH TDWSISEISY TLGFEDAAHF THFFKKHTNQ TPTAYRS
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