Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4694 |
Symbol | |
ID | 8360870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 5853326 |
End bp | 5854111 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644966847 |
Product | diaminopimelate epimerase |
Protein accession | YP_003124332 |
Protein GI | 256423679 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.483748 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0110449 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGCAA TACATTTTTA CAAATACCAG GGTACCGGCA ATGATTTCGT GATCATGGAC AACCGGAACG GAGAATACAA TTTTCTTACA GAAGAACAGG TGCACTTTCT TTGTGACAGA CGTTTCGGTA TCGGAGCGGA TGGTTTGATG CTGCTGAATA AACAGGAAGG ATATGACTTC GGTATGAAGT ATTACAATGC CGATGGTCGT GAAAGCAGCA TGTGTGGTAA TGGTGGCCGT TGCCTGGTAG CTTTTGCCCG TAAAATGGGA CTGACAGACG AAAAACTGAG CTTCCTCGCA GTGGATGGTC CACATGAAGC GACCTTAAAA GGCGATGATT GGGTGAACCT GAAAATGCAG GACGTGAGCG GTGTTGAGAT CAATTCCCTT CATTCTTACC TGAATACCGG TTCTCCACAT TATGTGAAAT TTGTAGCAGA TGTGAAAGCG GTAGATGTAT ACAACGAAGG TAAACAGATC CGCTACAACG ACCGCTTTGC CAAAGAAGGC ACTAACGTAA ACTTTGTACA ATCGCTCGAT AAAGGCATCT TCGTACGTAC CTATGAACGC GGTGTCGAAG ACGAAACCTA CTCCTGTGGT ACAGGCGTAA CAGCAGCAGC ACTGATGACT GCCGGTGCAG AAACAAAAGA ATACATCGTA CCTGTACAGA CGCTGGGCGG TAAACTGGAA GTACGCTTTA CCCGCATCGG TGAAAAAGCC TACAACAATA TCTGGCTTTG CGGACCCGCT ACCCTTGTAT TCGAGGGAAA TATCACATTG CCATAA
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Protein sequence | MSAIHFYKYQ GTGNDFVIMD NRNGEYNFLT EEQVHFLCDR RFGIGADGLM LLNKQEGYDF GMKYYNADGR ESSMCGNGGR CLVAFARKMG LTDEKLSFLA VDGPHEATLK GDDWVNLKMQ DVSGVEINSL HSYLNTGSPH YVKFVADVKA VDVYNEGKQI RYNDRFAKEG TNVNFVQSLD KGIFVRTYER GVEDETYSCG TGVTAAALMT AGAETKEYIV PVQTLGGKLE VRFTRIGEKA YNNIWLCGPA TLVFEGNITL P
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