| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4667 |
|---|
| Symbol | |
|---|
| ID | 8360841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5823660 |
|---|
| End bp | 5826890 |
|---|
| Gene Length | 3231 bp |
|---|
| Protein Length | 1076 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644966818 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003124305 |
|---|
| Protein GI | 256423652 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5305] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0836755 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000000312371 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTA AAAGGACCAA CAATATTGTA GGTTGGGTTG TCTGTATCAT TGCCTGCACT
GTCTACATTA TGACTATGGA GGCCACCGGA AGTCTGTGGG ACTGCGGCGA GTTTATTTCT
AGTGCCTACA AGGTACAGGT TCCGCACCCT CCGGGAGCTC CTTTATTTGT GCTGTTGGGT
AGATTGTTTA CCATTCCGTT TCCGCCCTCT CAGGCAGCTA TCGGCGTAAA CCTGATGTCT
GCACTGTCAA GCGGATTCAC TATCCTCTTC CTCTTCTGGA CCATCACACA CTTCGCTCGT
CGTCTGATGG TGAAAGCCGG AGAAGTTATT TCCAGCGAAA AAATGATCGC CATCATGGGC
GCCGGCACAG TAGGTGCATT AGCTTACACC TTCTCTGACT CTTTCTGGTT CTCTGCCGTT
GAAGGCGAGG TGTACGCAAT GTCCTCCCTC TTCACCGCCA TCGTATTCTG GGCGATCCTG
AAATGGGAAC ACGAATCAGA TGAAGCATAT GCTGACCGCT GGATCGTTTT CATCGCTTTC
ACAATGGGTC TCTCTATCGG TGTCCATCTG CTGAACCTCC TCACCATCCC GGCTATCGTA
ATGGTGTACT ACTTCAAACG CTCTCCTAAA GTAACGCCTA TCGGTACTTT CTGGGCATTT
ATCATTGGTT GCGCTATCAC CGGTCTCGTG CAGAAGTTCG TTATCCAGGA TACCGTTAAG
GCTTCCGGTC TGATGGACGT ATTCTTCGTG AATAGCCTCG GCCTGCCATT CTACAGTGGC
TTCGCTTTCT ACTTCCTCGC ACTGGCTGCA GTCCTGTTAT ACGGATTGAA AAATCCTAAA
TTCGGTCTCT ACGCGCCACT GATCCTGATC GCTTCCGTTA TCGTCATCCC TGCCTTTAAC
GACGCTTCAG GTGCTGGTAT CAAAATATTA AAGCTGATCA TCTCAGCCGC AATCGTATTT
ATACCTTATC TGGTAAAACT GTTCGATGTT AAAATCGAAT CATCCAGCTT TACTCACGCT
ATCAAAGTAA CCATCTACTC TATCATCTTC CTGCTGCTCG GTTACTCCAC TTATATTACT
ACAATGATCC GCTCTACCGC GAATCCATCT GTAGATATGT ACAACGTGGA CAACCCGATC
TCCCTGGTAG GTTACCTGGG TCGTGAACAG TATGGTGATT TCCCGCTGAT CTATGGTCAG
GTATTCACTG CCCGCCCTAC TTCTTATGAA GATGCAGGAA ACATCTACGC ACGTGGTAAA
GACAAATATG AGATCGCTGG TAAAAAACAG GTTCCTGTTT ACGCTGCTGA AGATAAAATG
CTGTTCCCGC GTGTCTGGGA CGCCAGCAAC GATCAGGGGC ATGCGGATTA CTACCGCGAC
TGGCTGGGGC TCGATGCCAA CGCACGTCCT AGCTTTAAAG ATAACGTCAG CTTCTTCGTG
ACATACCAGG TTTACTTCAT GTACTTCCGC TACTTTATGT GGAACTTCTC CGGTAAACAA
AACGATACAC AAGGTTACGG TAACAAACGT GACGGTAACT GGATCACTGG TATCTCCTTT
ATAGATAATA TTATGTACGG CGACCAATCC ATGATGCCGG ACAGCTTAAA GAACAACAAA
GGACACAATA CCCTGTTCCT CCTGCCGTTC GTACTGGGTG TGATTGGTTT CTTCTATCAG
TATAACAATC ACCGTAAAGA TACACTGGTC GCTTCCCTCC TGTTCTTCTT CACCGGTTTT
GCCATCGTGC TCTACCTGAA CCAGGCGGGT AACCAGCCAC GTGAACGTGA CTATGCATAC
GTAGGTTCCT TCTATGCATT CGCCATCTGG ATCGGTCTGG GTGTACTGTC TGTGGCTGAA
TTCCTGAAGA AAAAGACTAA ATCAGCGATC TCCGCTCCGG CAGCTGCACT CGTTTGTCTG
CTGGCAGTGC CTGTCCTGAT GGGCTTCCAG GAATGGGATG ACCACGACCG TTCTACCAAA
ACCATCGCCC GTGATGTTGC TGCTGACTAC CTGAACTCCT GTGCTGAAAA TGCAATCCTG
TTCACCGTCG GCGATAACGA TACCTACCCG CTGTGGTATG CACAGGAAGT AGAAGGTATC
CGTCCTGATG TTCGTGTGAT CAACCTCAGC CTCCTCGGTG TAGACTGGTA TATCGATCAG
CAACGTCATA TGGTTAACAA GAGCGCAGGC GTTCCAATGT CCTGGACTCC TGATAAATAC
CAGGGCGAAA ACCGCAACTA CATCCAATAC TATGATGGCG GTAGCTTCCC GCAGGATAAA
TTCTATAACC TGAGAGAAGT AATGGCATTC ATGGGTTCTG ATGATCCTCG TGCTAAACTG
TCTACTACCG ACGGTTCACA GATCAACTAC CTGCCTGCTA AAAAACTCTT CGTACCGGTA
AACGTAGCAG AAGTGCTGAA AAACGGTACC GTTGATATCC ACGATAGCGC ACGTGTAATG
CCACAGCTGC CATTCCAGAT CAGCAAATCT TACCTGCTGA AAAATGACCT GGCGGTATAC
GACATCATCG CCGCTAACGA CTGGAAACGT CCTATCTACT TCACCAGCCC AACCGATCTC
GGTCTGAACG ACTACCTCCG TCCGGATGGT CTGACCTACC GCCTCGTGCC GCTGGCTAAG
ACAGAAAGCA ACGATCCGAT GGGTGCCGAC AATAACGTTA ACATCCCTGT GATGTACAAA
AACCTGATGG AAAAATTCGC TTTCGGTGGT GCTAACGTTC CAGGTACTTA CTTCGACGAA
CCTAACCGTA AACTGCTGCA ATACCTGCGT AACGCTTACA CTAAACTGGG TACCGCTATG
GCCCTGGCCG GTGACAAAGA TTCCGCACTC GCAGTACTGA ATAAGAGCGA TAAAAACCTC
CTGCAGGGTA ACTTCCCTTA CGCAATGACC ACGCCAGGAC AGATGCACAA CTACAGCTCT
ATGCAGACTG TATACGCTTA CTACCTGGCT GGCGATGCGA AGAAAGCAGA CGAGATCTCT
CAGCTGATCA TCAAAGATTG TACACAGCAG TTACAATACT ATCGCTGCCT GCCACCTTCT
AAAATGAATG GTTTGCAGCG TGATATGCAG ATGGCTGAAC AGTTCATCAC CCTGCTGCAG
CGTATGAAGG AAGATTTTAC ACATCCTGAA CGCCGCCAGT CACTGGAGCA ACCGGGTGGT
GTCAATATTG ACACTGTTGA GCCGGAAGCT GATGGTGCAC AAACAAAATA A
|
|---|
| Protein sequence | MNFKRTNNIV GWVVCIIACT VYIMTMEATG SLWDCGEFIS SAYKVQVPHP PGAPLFVLLG
RLFTIPFPPS QAAIGVNLMS ALSSGFTILF LFWTITHFAR RLMVKAGEVI SSEKMIAIMG
AGTVGALAYT FSDSFWFSAV EGEVYAMSSL FTAIVFWAIL KWEHESDEAY ADRWIVFIAF
TMGLSIGVHL LNLLTIPAIV MVYYFKRSPK VTPIGTFWAF IIGCAITGLV QKFVIQDTVK
ASGLMDVFFV NSLGLPFYSG FAFYFLALAA VLLYGLKNPK FGLYAPLILI ASVIVIPAFN
DASGAGIKIL KLIISAAIVF IPYLVKLFDV KIESSSFTHA IKVTIYSIIF LLLGYSTYIT
TMIRSTANPS VDMYNVDNPI SLVGYLGREQ YGDFPLIYGQ VFTARPTSYE DAGNIYARGK
DKYEIAGKKQ VPVYAAEDKM LFPRVWDASN DQGHADYYRD WLGLDANARP SFKDNVSFFV
TYQVYFMYFR YFMWNFSGKQ NDTQGYGNKR DGNWITGISF IDNIMYGDQS MMPDSLKNNK
GHNTLFLLPF VLGVIGFFYQ YNNHRKDTLV ASLLFFFTGF AIVLYLNQAG NQPRERDYAY
VGSFYAFAIW IGLGVLSVAE FLKKKTKSAI SAPAAALVCL LAVPVLMGFQ EWDDHDRSTK
TIARDVAADY LNSCAENAIL FTVGDNDTYP LWYAQEVEGI RPDVRVINLS LLGVDWYIDQ
QRHMVNKSAG VPMSWTPDKY QGENRNYIQY YDGGSFPQDK FYNLREVMAF MGSDDPRAKL
STTDGSQINY LPAKKLFVPV NVAEVLKNGT VDIHDSARVM PQLPFQISKS YLLKNDLAVY
DIIAANDWKR PIYFTSPTDL GLNDYLRPDG LTYRLVPLAK TESNDPMGAD NNVNIPVMYK
NLMEKFAFGG ANVPGTYFDE PNRKLLQYLR NAYTKLGTAM ALAGDKDSAL AVLNKSDKNL
LQGNFPYAMT TPGQMHNYSS MQTVYAYYLA GDAKKADEIS QLIIKDCTQQ LQYYRCLPPS
KMNGLQRDMQ MAEQFITLLQ RMKEDFTHPE RRQSLEQPGG VNIDTVEPEA DGAQTK
|
|---|
| |