| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4641 |
|---|
| Symbol | |
|---|
| ID | 8360814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5797824 |
|---|
| End bp | 5802209 |
|---|
| Gene Length | 4386 bp |
|---|
| Protein Length | 1461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644966795 |
|---|
| Product | YD repeat protein |
|---|
| Protein accession | YP_003124283 |
|---|
| Protein GI | 256423630 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.32679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00117662 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTTA ATAAAAATGT AATTCATCCT ATAACACTGG GTGCTTTCCT GATTGTACCA
GTTTTTTTGG CGGCACAAAA CAAGCCTGGA GGAATACGCA CAACAGCGAC GCCTGTAGCT
GTTCCGGCGG CATATACAAA TACGCAAACG AATTATGTCA GGACCTGGGA GCCAGATATG
CCTTTAACAG ATCCTGCTGC TGTCGTGTCG GCGGCTCGGA AAGCGAGGGA GGTAAAACAG
ACTACTCAGT ATTTGGATGG TTTGGGCAGG CCTTTGCAAA CTGTTTCGAA AGCTACAAGT
CCCAATGGCC GGGATATTGT TGTGCCAGTT GTTTATGATG CTTATGGCAG GGAAGAGTTC
AAATACCTTC CTTATGTGCA ACAAACAGCC AGTGACGGTA AATTTAAAAT GGCTCCTTTT
TCTGCTCAAA GGGATTTTTA TAAGAACGGG GTACTCAATC CGGGAGTTGC GGAAGACAGC
ATTTACTATA GCCGGACGCA ATATGAGTCT TCTCCACTGA ACAGGCCATT GAAGGGTTAT
GCTCCAGGGA GCAGCTGGGC GGCCAAACCT GCAGAAACCC GCTATCTGGT TAATACGGTG
AGCGACTCTG TTCGGATTTG GAATATGGGA ACTGTTGTAC CTACGAGCAA TTCTAACTAT
GGTGCCGGGC AGTTACAGAA GAATGTAAGT ATCGATGAAC ATGGTAGTCA GGTAGTTGAG
TTTAAGGACA AAGAAGACCG GGTTGTTTTG AAGAAAGTAC AAATTGCGAA TAATCCCGGT
ACCGGACATA TCGGATGGCT GTGTACTTAC TATGTATATG ATAATTTGGG GATGCTTCGC
TTCGTCATCC CCCCGTTAGC CGTGGAAGCG ATCAAAGGGG GGTGGACGAT AAGTACTGTT
GTGGCCAATG AGTTGTGTTT TCAATATCAG TATGACACCA GACAAAGGAT GACCCTTAAA
CAGGTTCCTG GAGCAGGTGC GCTTTTGATG GTGTATGATG TGCGGGACAG GCTGGTGTTT
ACGCAAGACT CAGTTCAGCG TGCGAAATCT CCGATGGAAT GGTTGGTGAC CTTTTATGAT
GACATCAACC GGCCTACGAT GACGGCAATT TATAAGGCAA CGGCGACAAG GGATACCCTA
CAAGCGAGAA CGAACCGGGC TCCGACATAT CAGAGTGTAT CTTATGTGCA GGCGGCAAAG
GCAGATCTGG CGTTGTACAG CCATGATGGT ACACCTTTAT ATACTGCGAC CAACAGCATC
GAGCTATTGG ATGGATTCGA TACAAATGGA TCCGGTGATA CTGAGGCCAA AATAGATGGT
TCGGTCACAG GAGATACGAA TATAATCACA GCCAGCAATC CTTTGCCCAA CATCCCTGCT
TCTGCTTTAA CACCCCTCTC CTATACATTC TATGATAATT ATAATTATTC CGGGAAGTTG
GCCTTTGTGG GTACAGATAC GGGAAAGCTC CTGGCGGCAG ATACCCTCTA TCCTGAGCGG
CTTCCAATAA CAAATGTGAC GCAAGGCCTT GTGACCGGTA GTAAGATAAG GGTATTGGGT
ACGGAAAAAT GGCTGACGAC TACCACCTAT TATGATGACA AGGCCAGGGC GATTCAGGTG
GTAAGTGAGA ATAATCTTGG TGGGAAGGAT GTATTCAACA CACTTTACAG CTTTAAGGGA
CTTGTATTGG GCACTTATCT GCGCCATCAG AACCCTAAAA GCAGTATGTC ACAAAGTACC
TTATTGACCA CTATGACTTA TGATCATGGC GGACGGTTAT TGACGGTAAG AAAAAGGCTA
AATGATGATG TTAATCAAGA GAAGCTGATT GCCTCCAATA GTTATGATGA ACTTGGACAG
CTTAGACTGA AGCGTTTAGG AGTGACATCT TCAGGAAGTA TGATTGACAG TTTGAATTAT
ACCTATAATA TCCGTGGCTG GTTGCAGGGT ATCAACAAAA ACTTCGTGAA CAGCGGAACC
AGTACATCTA ACTGGTTTGG ACAGGAACTG AGTTATGATT ATGGCTTTGA TTCCGCCCAG
TATAATGGGA ATATATCAGG GGTGAAATGG AAAACGCGTG CTGACAGTGC CTGGGCGTAT
GGTTATAACT ATGACAAAGC AAACCGTCTG GCTGGGGCGT ATTTTACCCA GAAAAATGGT
GGCAGCTGGG CTCAGGACAA GAAGAATTTT TCTGTCAGCA ATCTGAGTTA TGATGCCAAT
AGCAATATCA AAACCATGTT GCAGAAGGGC ATGGTAGGCA CCACCAGCAA AACGATAGAT
AGCCTTATCT ATTCATATTC TGCGAACAGT AATAAACTGG CCGGGGTGCG TGACATTGAC
TCATCGATTA CGAAGTCGGC GCAGCTGGGT GATTTTATAG ATGGAAACAC AGGTGCAACT
GATTATGGTT ATGATGGCAA TGGCAACCTG ATCTCGGATT TGAATAAGAG GATTACTTCA
ATCAGTTACA ACCATCTGAA TCTTCCGTCT GTGATCACCA TTACGGGTAA AGGAACGATA
ACCTACCAAT ATGATGCTTC AGGAAACAAA CTATCTAAGA CGGTTTTGGA TAACAGCGGG
AGTTCACCTA AAACTACAGT TACAGATTAT GCTGGTGCCT TTGTGTACAG GCAAGATAGC
CTGGAGCTAA TCGGCCATGA AGAAGGTCGT ATCCGTCCGA TTTATAAAAG CGGGCAACCG
ATAGTGTATG CTTACGATTA TTTCGAGAAA GATCACCTGG GCAATGTGCG CACGGTGCTG
ACCGATCAGA CTGATTTTAC GATGTATGCG GCGACTATGG AGACTGAGGC GGCGCCTCAG
GAGGCTGCAT TGTTTAGCAA TGTGGAGGAA ACACGGGCTG AAAAACCATC GGGCTATCCG
GAAGACCAGA CCACAGAGGA GAACAAATCG GTAGCGAAGC TGAATGCCAA ACAGGGCGGT
AAGAAGATCG GGCCTTCATT GGTATTGCGG GTAATGGCTG GCGATACGGT TCAGATCAAT
GCGAAGGCTT TCTATAAATC TCAGGGACCA ACGGACAATA CGGCCAAGGC TGCTGTAGAG
GATATGATTG CTGGATTGGT ACAGGCTTTT GGTAGTAGTG TTGGGGAAAG TGATTTGCAT
GCTTCAGAAG TCGTTTCGAA TAATACTCCT TTTAACGCAG ATTTCTATAA TAATGATTAT
CAACGTTTAA AAGAGAAAAG TCAGGCAAAT GAAGAGTCTA ACCGCCCTAA GGCTTATTTA
AACTTTGTTT TATTCGACGA TGATTTTAAA TTAGTGAAGG ATAACAGCGG GGTAAGGCAG
ATCAAGGCTG ACCCGAACGA GCTGCAAGAG CTTGGTGTGG ATAAGATGGC GGTTGCCAAA
AGTGGTTTCT TGTACGTTTA TACGAGCAAC GAAAGTCAGC AGGATGTGTT CTTTGATAAT
GTTGTGTTGG GATTGAGTAG CGGACCTCTA TTGGAAGAAA CGCATTATTA TCCGTTTGGC
TTGACGATGG CGGGGATATC GACAAATGCG TTGAAGGGTG TGAATTATGC TAAGAACAGA
AAGGAGTTTA ATGGAATTGA GCATACTACC GATCTTGATC TTAATCAATA CGATGCTTTT
TATAGGACAT TAGATCCGCA GATTGGGAGA TGGGCGCAGG TTGATCCTAG ACCTCATGAG
ATGTTTAGTC CTTATGTTGC CATGGCAGGA AATCCCATTC TATACTCTGA TCCTCTTGGC
GATACCACCT ATAGATTTGA TACCAAGGGA ATTTATTTAG GGATGTTTGA CACCGACCAA
GCAGGAATGG TGGGTGCATT CGGATCGAAT TCTACGTCTA AAGATGGGAA GGGTAACGAG
AAAACAACAT ATAATGCAAT TACCTATTTT GGTTTCAACG ATCCAGAAAA TGATGCAGAA
CAATTGGCTA CCATGACAGT TGGACTAAAA GGATTAGTAA TAGTTTCAGA CGAAAACATT
AATTATGTGA TGGATAGATC AGATAGCAAA CACAGATCTA TGATTTCGCG ATGGTTTTTT
GCTTTTAGAG AAAGCGAAGA CCGAATGGAC TTTAATTGGA ACTATACGTT ACCAAGTCAG
GGGGTACTTC CTAACTCCCA TGATATGTCT GACTACGATG GCATTGGCGG ATTTATGTTA
TTTTCGGGTG CAAGTACAAA TGCATATAAT TTAAATGATG CAGGGCAATT TTTATGGGGA
AACTCTATGC AGCGAATGGG TTTCGGATAC TTTAGTGCAA AATTCGGTTC TCAAGCGAAC
GAGTTATTTG GTGATACGAA GGCCGATCAA CAAGCAATAA GAAAAGGATT CCATTATAAA
GTACGCACAT CGAAAATAGC TGCTGGACCA TTTAATGGTT TACCTAGAGA AGTAGAGGAC
AAATAA
|
|---|
| Protein sequence | MEFNKNVIHP ITLGAFLIVP VFLAAQNKPG GIRTTATPVA VPAAYTNTQT NYVRTWEPDM
PLTDPAAVVS AARKAREVKQ TTQYLDGLGR PLQTVSKATS PNGRDIVVPV VYDAYGREEF
KYLPYVQQTA SDGKFKMAPF SAQRDFYKNG VLNPGVAEDS IYYSRTQYES SPLNRPLKGY
APGSSWAAKP AETRYLVNTV SDSVRIWNMG TVVPTSNSNY GAGQLQKNVS IDEHGSQVVE
FKDKEDRVVL KKVQIANNPG TGHIGWLCTY YVYDNLGMLR FVIPPLAVEA IKGGWTISTV
VANELCFQYQ YDTRQRMTLK QVPGAGALLM VYDVRDRLVF TQDSVQRAKS PMEWLVTFYD
DINRPTMTAI YKATATRDTL QARTNRAPTY QSVSYVQAAK ADLALYSHDG TPLYTATNSI
ELLDGFDTNG SGDTEAKIDG SVTGDTNIIT ASNPLPNIPA SALTPLSYTF YDNYNYSGKL
AFVGTDTGKL LAADTLYPER LPITNVTQGL VTGSKIRVLG TEKWLTTTTY YDDKARAIQV
VSENNLGGKD VFNTLYSFKG LVLGTYLRHQ NPKSSMSQST LLTTMTYDHG GRLLTVRKRL
NDDVNQEKLI ASNSYDELGQ LRLKRLGVTS SGSMIDSLNY TYNIRGWLQG INKNFVNSGT
STSNWFGQEL SYDYGFDSAQ YNGNISGVKW KTRADSAWAY GYNYDKANRL AGAYFTQKNG
GSWAQDKKNF SVSNLSYDAN SNIKTMLQKG MVGTTSKTID SLIYSYSANS NKLAGVRDID
SSITKSAQLG DFIDGNTGAT DYGYDGNGNL ISDLNKRITS ISYNHLNLPS VITITGKGTI
TYQYDASGNK LSKTVLDNSG SSPKTTVTDY AGAFVYRQDS LELIGHEEGR IRPIYKSGQP
IVYAYDYFEK DHLGNVRTVL TDQTDFTMYA ATMETEAAPQ EAALFSNVEE TRAEKPSGYP
EDQTTEENKS VAKLNAKQGG KKIGPSLVLR VMAGDTVQIN AKAFYKSQGP TDNTAKAAVE
DMIAGLVQAF GSSVGESDLH ASEVVSNNTP FNADFYNNDY QRLKEKSQAN EESNRPKAYL
NFVLFDDDFK LVKDNSGVRQ IKADPNELQE LGVDKMAVAK SGFLYVYTSN ESQQDVFFDN
VVLGLSSGPL LEETHYYPFG LTMAGISTNA LKGVNYAKNR KEFNGIEHTT DLDLNQYDAF
YRTLDPQIGR WAQVDPRPHE MFSPYVAMAG NPILYSDPLG DTTYRFDTKG IYLGMFDTDQ
AGMVGAFGSN STSKDGKGNE KTTYNAITYF GFNDPENDAE QLATMTVGLK GLVIVSDENI
NYVMDRSDSK HRSMISRWFF AFRESEDRMD FNWNYTLPSQ GVLPNSHDMS DYDGIGGFML
FSGASTNAYN LNDAGQFLWG NSMQRMGFGY FSAKFGSQAN ELFGDTKADQ QAIRKGFHYK
VRTSKIAAGP FNGLPREVED K
|
|---|
| |